View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_100 (Length: 298)

Name: NF11278_low_100
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_100
NF11278_low_100
[»] chr3 (1 HSPs)
chr3 (20-167)||(48253226-48253373)
[»] chr4 (3 HSPs)
chr4 (20-159)||(29665234-29665373)
chr4 (125-185)||(6615160-6615219)
chr4 (132-186)||(47667540-47667593)
[»] chr7 (1 HSPs)
chr7 (20-186)||(45089851-45090004)
[»] chr8 (5 HSPs)
chr8 (94-186)||(39516138-39516230)
chr8 (94-186)||(7796115-7796207)
chr8 (94-186)||(7815391-7815483)
chr8 (94-169)||(24068726-24068801)
chr8 (94-186)||(7770334-7770426)
[»] scaffold0687 (1 HSPs)
scaffold0687 (94-186)||(6240-6332)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 48253373 - 48253226
Alignment:
Q  20 gtggtggtggttgttgttgtcgtcgccgcaacagtggtggttgagtttgcggcgtttgtggttgattgagcggtttcagaaccgaaaatgggggatttaa 119  Q
    |||||||||||||||||||| || | |||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  48253373 gtggtggtggttgttgttgttgttgtcgcaacagtggtggttgagtttacggctgttgtggttgattgaggggtttcagaaccgaaaatgggggatttaa 48253274  T
Q  120 aagggttaaagagattaggatgaattactctttcttctatgttgtggt 167  Q
    | |||||||  |||||||||||||||| ||||||||||||||||||||    
T  48253273 aggggttaagaagattaggatgaattattctttcttctatgttgtggt 48253226  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 29665234 - 29665373
Alignment:
Q  20 gtggtggtggttgttgttgtcgtcgccgcaacagtggtggttgagtttgcggcgtttgtggttgattgagcggtttcagaaccgaaaatgggggatttaa 119  Q
    |||||||||||||||||||| || | | |||||||||||||||| ||||||||| |||||||||||||||  |||||| ||  |||||||||||||||||    
T  29665234 gtggtggtggttgttgttgttgttgtcacaacagtggtggttgattttgcggcggttgtggttgattgaggagtttcataattgaaaatgggggatttaa 29665333  T
Q  120 aagggttaaagagattaggatgaattactctttcttctat 159  Q
    | ||||||||||||||||||||||||| ||||||||||||    
T  29665334 aggggttaaagagattaggatgaattattctttcttctat 29665373  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 6615219 - 6615160
Alignment:
Q  125 ttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactca 185  Q
    ||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||    
T  6615219 ttaaagagattaggatgaatt-ctttttcttctctgttgtggtgactgttgatggaactca 6615160  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 47667593 - 47667540
Alignment:
Q  132 gattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    |||||||||||||| || |||||||| |||| ||||||| |||||||||||||||    
T  47667593 gattaggatgaatt-ctttttcttctctgttatggtgactgttgatggaactcag 47667540  T

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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 45090004 - 45089851
Alignment:
Q  20 gtggtggtggttgttgttgtcgtcgccgcaacagtggtggttgagtttgcggcgtttgtggttgattgagcggtttcagaaccgaaaatgggggatttaa 119  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||           ||||||||||||||    
T  45090004 gtggtggttgttgtcgtcgtcgtcgccgcaacagtggtggttgagtttgcggcgtttgtggttgattgaggggtt-----------aatgggggatttaa 45089916  T
Q  120 aagggttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    | |||||||||||||||||| |||||| |||||||||| ||||||||||||  ||||||||||||||    
T  45089915 aggggttaaagagattaggaagaattattctttcttctgtgttgtggtgac--ttgatggaactcag 45089851  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 39516138 - 39516230
Alignment:
Q  94 ttcagaaccgaaaatgggggatttaaaagggttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||    
T  39516138 ttcagaaccaaaaatggggggtttaaagggattaaagagattaggatgaattcttctttcttctttgttgtggtgactgttgatggaactcag 39516230  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 7796207 - 7796115
Alignment:
Q  94 ttcagaaccgaaaatgggggatttaaaagggttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    ||||||||| |||||||||| |||||| || ||||||| |||||||||||||  |||||||||| |||| ||||||| |||||||||||||||    
T  7796207 ttcagaaccaaaaatggggggtttaaagggattaaagaaattaggatgaattgttctttcttctctgttatggtgactgttgatggaactcag 7796115  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 7815483 - 7815391
Alignment:
Q  94 ttcagaaccgaaaatgggggatttaaaagggttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    ||||||||| |||||||||| |||||| || ||||||| |||||||||||||  |||||||||| |||| ||||||| |||||||||||||||    
T  7815483 ttcagaaccaaaaatggggggtttaaagggattaaagaaattaggatgaattgttctttcttctctgttatggtgactgttgatggaactcag 7815391  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 24068801 - 24068726
Alignment:
Q  94 ttcagaaccgaaaatgggggatttaaaagggttaaagagattaggatgaattactctttcttctatgttgtggtga 169  Q
    |||||||||||||||||||| |||||| |  |||||||||||||||||||||| |||||||||| |||||||||||    
T  24068801 ttcagaaccgaaaatggggggtttaaaggaattaaagagattaggatgaattattctttcttctctgttgtggtga 24068726  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 7770426 - 7770334
Alignment:
Q  94 ttcagaaccgaaaatgggggatttaaaagggttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    ||||||||| |||||||| | |||||| || ||||||| |||||||||||||  |||||||||| |||| ||| ||| |||||||||||||||    
T  7770426 ttcagaaccaaaaatgggaggtttaaagggattaaagaaattaggatgaattgttctttcttctctgttatggagactgttgatggaactcag 7770334  T

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Target: scaffold0687 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 6240 - 6332
Alignment:
Q  94 ttcagaaccgaaaatgggggatttaaaagggttaaagagattaggatgaattactctttcttctatgttgtggtgaccgttgatggaactcag 186  Q
    ||||||||| |||||||||| |||||| || ||||||| |||||||||||||  |||||||||| |||| ||||||| |||||||||||||||    
T  6240 ttcagaaccaaaaatggggggtttaaagggattaaagaaattaggatgaattgttctttcttctctgttatggtgactgttgatggaactcag 6332  T

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