View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_101 (Length: 297)
Name: NF11278_low_101
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_101 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 26500212 - 26500392
Alignment:
| Q |
19 |
cttgattcagtcacggtccagcaatgtgagcaataaggattgccaaggctcattttactctttcgttgatttatctgcaatctgtcatgcataagaagcc |
118 |
Q |
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| T |
26500212 |
cttgattcagtcacggtccagcaatgtgagcaataaggattgccaagactcattttactctttcgttgatttatctgcaatctgtcaggcataagtagcc |
26500311 |
T |
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| Q |
119 |
-nnnnnnntgtatatggattgttgcatacataattatgacactctctaaaggagcaatccattgtatgcagatttggataa |
198 |
Q |
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| T |
26500312 |
aaaaaaaatgtatatggattgttgcatacataactatgacactctctaaaggagcaatccattgtatgcagatttggataa |
26500392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 26491226 - 26491326
Alignment:
| Q |
166 |
aaggagcaatccattgtatgcagatttggataaggcagttcctaatgagcataagaaatttcttgcaaatttggtttgggttcatgaagaggtggtgctt |
265 |
Q |
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| T |
26491226 |
aaggagcaatcctttgtacgcagatttggataaggcagttcctgatgagcataagaaatttcttgcaaatttggtttgggttcatgaagaggtggtgctt |
26491325 |
T |
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| Q |
266 |
a |
266 |
Q |
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| T |
26491326 |
a |
26491326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 26503663 - 26503755
Alignment:
| Q |
166 |
aaggagcaatccattgtatgcagatttggataaggcagttcctaatgagcataagaaatttcttgcaaatttggtttgggttcatgaagaggt |
258 |
Q |
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| T |
26503663 |
aaggagcagttcattgcatgcagatttggttaaggcagttcctgatgagcataagaaatttctcgcgaatttggtttgggtgcatgaagaggt |
26503755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 26487961 - 26488006
Alignment:
| Q |
221 |
aaatttcttgcaaatttggtttgggttcatgaagaggtggtgctta |
266 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26487961 |
aaatttctcgcaaatttggtttgggttcatgaagaggtggtgctta |
26488006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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