View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_102 (Length: 296)

Name: NF11278_low_102
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_102
NF11278_low_102
[»] chr3 (3 HSPs)
chr3 (1-284)||(39354716-39354998)
chr3 (97-270)||(46911478-46911650)
chr3 (97-284)||(32993142-32993328)
[»] chr2 (2 HSPs)
chr2 (6-287)||(42161165-42161446)
chr2 (90-286)||(16712210-16712405)
[»] chr8 (2 HSPs)
chr8 (98-273)||(40536476-40536650)
chr8 (90-286)||(20670189-20670384)
[»] chr7 (1 HSPs)
chr7 (98-189)||(45752864-45752955)
[»] chr4 (1 HSPs)
chr4 (98-189)||(15828618-15828708)
[»] chr1 (2 HSPs)
chr1 (231-287)||(41949597-41949653)
chr1 (228-277)||(43326565-43326615)
[»] chr6 (1 HSPs)
chr6 (18-59)||(26208357-26208398)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39354998 - 39354716
Alignment:
Q  1 ctatgaatggttggattaaactcaattgtgatgtagtatgtaaaggtaatagggagctttctgaatgtggtgggctttttcatcttcttatggaagatgg 100  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39354998 ctatgaatggttggattaaactcaattatgatgtagtgtgtaaaggtaatagggagctttctgaatgtggtgggctttttcatcttcttatggaagatgg 39354899  T
Q  101 attaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnnnnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||          
T  39354898 attaagggttttagtcgcaaaattggaacttgtgatgctttgcttattgagatgtggggtctttatttggggcttgatatggcttggaattggg-ttttt 39354800  T
Q  201 nctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttct 284  Q
     |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||||    
T  39354799 tctcacctgcttgtttaaaatgacttgaaggtgcttattgatacgattactaacaattgtaaaattaatggaaccatcccttct 39354716  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 46911478 - 46911650
Alignment:
Q  97 atggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnn 196  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| |||| || ||||||||| ||||  | |      
T  46911478 atggatcaagggttttagccgcaaaattggagcttgtgatgctctgcatgctgagatgtggggtctttatctgggactggatatggctaggag-agaggg 46911576  T
Q  197 nnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatg 270  Q
         ||||| || ||||| | | |||||  |||||||||||||| ||| | ||||||||||||||||||||||    
T  46911577 tatatctcacttgattgttgagagtgactcaaaggtgcttattgacatggttactaacaattgtaagattaatg 46911650  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 284
Target Start/End: Original strand, 32993142 - 32993328
Alignment:
Q  97 atggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnn 196  Q
    |||||| ||||||||||| | ||||||||||  |||||||||| ||  |  ||||||||||||||||||| ||||||| ||||||||||||||  | |      
T  32993142 atggatcaagggttttagccacaaaattggagtttgtgatgctctgcatgctgagatgtggggtctttatctggggctggatatggcttggag-agaggg 32993240  T
Q  197 nnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttct 284  Q
         ||||| || ||||| | | |||||  |||||| ||||||||||| | ||||||||||||||||| |||| |||| | ||||||    
T  32993241 tatgtctcacttgattgttgagagtgactcaaaggtgtttattgatatggttactaacaattgtaagatcaatggaaccattccttct 32993328  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 287
Target Start/End: Complemental strand, 42161446 - 42161165
Alignment:
Q  6 aatggttggattaaactcaattgtgatgtagtatgtaaaggtaatagggagctttctgaatgtggtgggctttttcatct-tcttatggaagatggatta 104  Q
    ||||||||| | |||||||||||||||| ||  || ||||||||  |||||||| |||| |||||  |  |||| | ||  ||| ||||||||||||| |    
T  42161446 aatggttgggtgaaactcaattgtgatggagcgtgcaaaggtaaaggggagcttgctgagtgtggcagaattttacgtcaatctgatggaagatggatca 42161347  T
Q  105 agggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnnnnnnnctc 204  Q
    |||| |||| ||||||||||||| |||| |||||| ||  |  |||||||||||||||||||||||||||||||||||||||||| || |       |||    
T  42161346 agggatttaatcgcaaaattggagcttgcgatgctctgcatgctgagatgtggggtctttatttggggcttgatatggcttggag-tgagggtttatctc 42161248  T
Q  205 acctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctctg 287  Q
    || || ||||| | | |||||  || ||||||||||||||| | ||||||||||| ||||| |||| |||| |||||||||||    
T  42161247 acgtgattgttgagagtgactcaaaagtgcttattgatatggttactaacaattgcaagatcaatggaaccatcccttctctg 42161165  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 286
Target Start/End: Complemental strand, 16712405 - 16712210
Alignment:
Q  90 atggaagatggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 189  Q
    ||||||||||||| ||| | |||||||||||||||||||||||| ||||| ||  |  | ||||||||| ||||||| |||||| |||||||||||||||    
T  16712405 atggaagatggatcaagagatttagtcgcaaaattggaacttgtaatgctctgcatgctaagatgtgggctctttatctggggcatgatatggcttggag 16712306  T
Q  190 ttgggnnnnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctct 286  Q
    |  ||       ||||| || |||||   | |||||  || ||||||||||||||| | ||||||||||||||||  |||| |||| ||||||||||    
T  16712305 taagg-gtttatctcacgtgattgttgtgagtgactcaaaagtgcttattgatatggttactaacaattgtaagaccaatggaaccatcccttctct 16712210  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 40536650 - 40536476
Alignment:
Q  98 tggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnnn 197  Q
    ||||| ||||||||| | |||||||||||| ||||||||||| ||  |  |||||||||||||||||||||||| || ||||||||||||||  | |       
T  40536650 tggatcaagggtttttgccgcaaaattggagcttgtgatgctctgcatgctgagatgtggggtctttatttgggactagatatggcttggag-agagggt 40536552  T
Q  198 nnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaa 273  Q
        ||||| || ||||| | | |||||  |||||||||||||||||| ||||||||||| ||||||| |||||||    
T  40536551 atatctcacttgattgttgagagtgactcaaaggtgcttattgatatggtcactaacaatcgtaagatcaatgaaa 40536476  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 90 - 286
Target Start/End: Complemental strand, 20670384 - 20670189
Alignment:
Q  90 atggaagatggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 189  Q
    ||||||||||||| ||  | |||||||| |||||||||| |||||||||| |   |  ||||||||||||||||||||||||| ||||||||||||||||    
T  20670384 atggaagatggatcaaaagatttagtcgtaaaattggaatttgtgatgctctacatgctgagatgtggggtctttatttggggtttgatatggcttggag 20670285  T
Q  190 ttgggnnnnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctct 286  Q
     || |       ||||| || ||||| | | |||||  || || |||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||    
T  20670284 -tgagggtttatctcacgtgattgttgagagtgactcaaaagttcttattgatatggttactaacaattgcaagatcaatggaaccatcccttctct 20670189  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 45752955 - 45752864
Alignment:
Q  98 tggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 189  Q
    ||||| |||||||||||||| ||||||||| ||||||||||| ||  |  ||||||||||||||||||| | ||||| ||||||||||||||    
T  45752955 tggatcaagggttttagtcgtaaaattggagcttgtgatgctctgcatgctgagatgtggggtctttatctagggctggatatggcttggag 45752864  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 15828708 - 15828618
Alignment:
Q  98 tggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 189  Q
    ||||| ||||||||||| | ||||||| || ||||| ||||| ||| |  ||||||||||| ||||||| ||||||| ||||||||||||||    
T  15828708 tggatcaagggttttagccacaaaattagagcttgtcatgctctgtatgatgagatgtggg-tctttatctggggctagatatggcttggag 15828618  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 41949597 - 41949653
Alignment:
Q  231 gtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctctg 287  Q
    ||||||||||||||||| ||||||||||| ||||| |||| |||| ||| |||||||    
T  41949597 gtgcttattgatatgattactaacaattgcaagatcaatggaaccatccattctctg 41949653  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 43326615 - 43326565
Alignment:
Q  228 aaggtgcttattgatatga-tcactaacaattgtaagattaatgaaacctt 277  Q
    |||||||||||| |||||  | |||||||||||||||||||||||||||||    
T  43326615 aaggtgcttattaatatgggttactaacaattgtaagattaatgaaacctt 43326565  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 26208357 - 26208398
Alignment:
Q  18 aaactcaattgtgatgtagtatgtaaaggtaatagggagctt 59  Q
    |||||||||||||||| || ||||||||||||| ||||||||    
T  26208357 aaactcaattgtgatggagcatgtaaaggtaatggggagctt 26208398  T

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