View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_108 (Length: 284)

Name: NF11278_low_108
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_108
NF11278_low_108
[»] chr6 (2 HSPs)
chr6 (125-208)||(26446774-26446857)
chr6 (22-59)||(26446923-26446960)
[»] chr8 (4 HSPs)
chr8 (125-208)||(43579951-43580034)
chr8 (125-210)||(24749768-24749863)
chr8 (22-59)||(24749665-24749702)
chr8 (22-59)||(43580100-43580137)
[»] chr5 (2 HSPs)
chr5 (125-208)||(21011572-21011655)
chr5 (22-59)||(21011488-21011525)
[»] chr7 (1 HSPs)
chr7 (126-177)||(7338448-7338499)
[»] chr1 (1 HSPs)
chr1 (126-196)||(24501740-24501810)
[»] chr3 (1 HSPs)
chr3 (1-29)||(5454580-5454608)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 26446857 - 26446774
Alignment:
Q  125 ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26446857 ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta 26446774  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 26446960 - 26446923
Alignment:
Q  22 aagaagatgaattcaacgttaaaacctaacacaatcat 59  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26446960 aagaagatgaattcaacgttaaaacctaacacaatcat 26446923  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 43580034 - 43579951
Alignment:
Q  125 ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  43580034 ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagaatcagcaacttttccctta 43579951  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 24749768 - 24749863
Alignment:
Q  125 ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcg----------tcgtcgttccagattcagcagcttttcccttaaa 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||    
T  24749768 ctttttcacgaggaagaagatgaaagaaacctggattttgtcttggttttcgtcgtcgttcgtcgtcgttccagattcagcagcttttcccttaaa 24749863  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 24749665 - 24749702
Alignment:
Q  22 aagaagatgaattcaacgttaaaacctaacacaatcat 59  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24749665 aagaagatgaattcaacgttaaaacctaacacaatcat 24749702  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 43580137 - 43580100
Alignment:
Q  22 aagaagatgaattcaacgttaaaacctaacacaatcat 59  Q
    |||||||||||||||||||||||| | |||||||||||    
T  43580137 aagaagatgaattcaacgttaaaatccaacacaatcat 43580100  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 21011572 - 21011655
Alignment:
Q  125 ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  21011572 ctttttcgcgaggaagaagatgaaagaaacctggattttgttttcgttttcgtcgtcgttccagaatcagcagcttttccctta 21011655  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 21011488 - 21011525
Alignment:
Q  22 aagaagatgaattcaacgttaaaacctaacacaatcat 59  Q
    |||||||||||||||||||||||||| |||||||||||    
T  21011488 aagaagatgaattcaacgttaaaacccaacacaatcat 21011525  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 7338499 - 7338448
Alignment:
Q  126 tttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgt 177  Q
    |||||||||| |||||||| |||| |||||| ||||||||||||||||||||    
T  7338499 tttttcgcgaagaagaagaggaaacaaacctagattttgtcttcgttttcgt 7338448  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 24501740 - 24501810
Alignment:
Q  126 tttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagca 196  Q
    |||||||||| ||||||||  ||| ||||||| ||||||||||| |||||||  ||||||| | |||||||    
T  24501740 tttttcgcgaagaagaagagcaaacaaacctgaattttgtcttccttttcgttttcgttcctggttcagca 24501810  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5454608 - 5454580
Alignment:
Q  1 ttggtcacatcagcatataaaaagaagat 29  Q
    |||||||||||||||||||||||||||||    
T  5454608 ttggtcacatcagcatataaaaagaagat 5454580  T

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