View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_118 (Length: 261)
Name: NF11278_low_118
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_118 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 33169910 - 33170138
Alignment:
| Q |
17 |
cattttgagaggctagtgatatgaaaatagatacttcattgctcaatgcagaacctcctccagctaaatcagacaatgctctaatggcaatgaaaggtat |
116 |
Q |
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| T |
33169910 |
cattttgagaggctaatgatatgaaaatagatacttcattgctcaatgcagaacctcctccagctaaatcagacaatgctctaatggcaatgaaaggtat |
33170009 |
T |
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| Q |
117 |
tttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttggagtagcatcaaatttacaattcaaatgatctctataagctttgttgtca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |
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| T |
33170010 |
tttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttggagtagcatcaaatttgctgttcaaatgatctctataagctttattgtca |
33170109 |
T |
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| Q |
217 |
acaaacatattggcacttactcctttctt |
245 |
Q |
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| T |
33170110 |
acaaacatattggcacttactcctttctt |
33170138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 33154188 - 33154416
Alignment:
| Q |
17 |
cattttgagaggctagtgatatgaaaatagatacttcattgctcaatgcagaacctcctccagctaaatcagacaatgctctaatggcaatgaaaggtat |
116 |
Q |
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||||||||||||||| |||| ||| |||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33154188 |
cattttgagaggctaaagataagaagatagatgcttcattggacaatgctgaacctcctccagcaaaatcagacaatgctctaatggcaatgaaaggtat |
33154287 |
T |
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| Q |
117 |
tttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttggagtagcatcaaatttacaattcaaatgatctctataagctttgttgtca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
33154288 |
tttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttggagtagcatcgaatttacaattcaaatgatctctatatgctttgttgtca |
33154387 |
T |
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| Q |
217 |
acaaacatattggcacttactcctttctt |
245 |
Q |
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| T |
33154388 |
acaaatatattggcagtgacccctttctt |
33154416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 33144482 - 33144676
Alignment:
| Q |
51 |
ttcattgctcaatgcagaacctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaagcaactgcagca |
150 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |
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| T |
33144482 |
ttcattggtcaatgatgaacctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaggcaacagaagca |
33144581 |
T |
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| Q |
151 |
ctttccatgtctgttggagtagcatcaaatttacaattcaaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctt |
245 |
Q |
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| T |
33144582 |
ctttccatgtctactggagtagcatcaaatttcaagttcaaaaaatctctataagctttgttgtcaacaaacacattggcacttactcctttctt |
33144676 |
T |
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