View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_12 (Length: 640)

Name: NF11278_low_12
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_12
NF11278_low_12
[»] chr2 (4 HSPs)
chr2 (20-120)||(32483698-32483798)
chr2 (32-116)||(12874736-12874820)
chr2 (52-119)||(35926777-35926844)
chr2 (52-116)||(981053-981117)
[»] chr5 (4 HSPs)
chr5 (32-105)||(17047971-17048044)
chr5 (32-116)||(13657605-13657689)
chr5 (45-116)||(20510424-20510495)
chr5 (34-90)||(22297880-22297936)
[»] chr7 (2 HSPs)
chr7 (33-116)||(21657353-21657436)
chr7 (32-116)||(19105311-19105395)
[»] chr6 (1 HSPs)
chr6 (66-120)||(13340593-13340647)
[»] chr8 (3 HSPs)
chr8 (32-117)||(9861623-9861708)
chr8 (39-116)||(36874366-36874443)
chr8 (52-120)||(31212365-31212433)
[»] chr1 (1 HSPs)
chr1 (39-116)||(23485795-23485872)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 32483798 - 32483698
Alignment:
Q  20 attcactagctcctctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatattttatgg 119  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||    
T  32483798 attcactagctcctctattgtaatactcaatgtagagtagagactgatttcataaatgaaaatttttagagaaaccaaaagcctaaaaaatattttatgg 32483699  T
Q  120 g 120  Q
    |    
T  32483698 g 32483698  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 12874820 - 12874736
Alignment:
Q  32 ctctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    ||||| ||||| |||||| |||||| |||| || |||||||| ||||||||||||||||| | |||||| |||| | ||||||||    
T  12874820 ctctagtgtaagactcaatgtagagcagagactaatttcatagatgaaattttttagagagaccaaaagtctaagggatatttta 12874736  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 35926844 - 35926777
Alignment:
Q  52 tagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatattttatgg 119  Q
    |||||||||| || |||||||||||||||| |||||||| ||  |||| |||||  ||||||||||||    
T  35926844 tagagtagagactaatttcataaatgaaatgttttagaggaactaaaaacctaaaaaatattttatgg 35926777  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 981053 - 981117
Alignment:
Q  52 tagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    ||||| |||| || |||||||||||||||  ||||||||  | ||||||||||| ||||||||||    
T  981053 tagagcagagactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatatttta 981117  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 17047971 - 17048044
Alignment:
Q  32 ctctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaa 105  Q
    ||||| |||||||||||| |||||| |||| || |||| ||| |||||||||||||||| || |||||||||||    
T  17047971 ctctactgtaatactcaatgtagagcagagactaatttaatagatgaaattttttagaggaaccaaaagcctaa 17048044  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 13657689 - 13657605
Alignment:
Q  32 ctctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    ||||| |||||||||||| |||||| | |  || |||||||| ||||||||||||||||| | |||||| |||| ||||||||||    
T  13657689 ctctagtgtaatactcaatgtagagcaaaaactaatttcatagatgaaattttttagagagaccaaaagtctaaagaatatttta 13657605  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 20510424 - 20510495
Alignment:
Q  45 ctcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    ||||| |||||| || |||| ||||||| ||||||||| |||||||  |||||||||||||  |||||||||    
T  20510424 ctcaatgtagagcaggggctaatttcatgaatgaaattgtttagagggatcaaaagcctaaaaaatatttta 20510495  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 22297880 - 22297936
Alignment:
Q  34 ctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagag 90  Q
    |||||||||||||||| ||||||  ||| || |||||||||||||||  ||||||||    
T  22297880 ctattgtaatactcaatgtagagctgagactaatttcataaatgaaaaattttagag 22297936  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 21657436 - 21657353
Alignment:
Q  33 tctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    |||| |||||||||||| |||||| |||| || ||||||||||||||| ||||| ||  || |||||| |||| ||||||||||    
T  21657436 tctaatgtaatactcaatgtagagcagagactaatttcataaatgaaaattttttgaagaaccaaaagtctaaagaatatttta 21657353  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 19105395 - 19105311
Alignment:
Q  32 ctctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    ||||| |||||||||||| |||||| |  | || |||||||||||||||  || |||||  | ||||||||||| ||||||||||    
T  19105395 ctctagtgtaatactcaatgtagagcattgactaatttcataaatgaaaaattatagagggaccaaaagcctaaagaatatttta 19105311  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 13340593 - 13340647
Alignment:
Q  66 atttcataaatgaaattttttagagaaatcaaaagcctaacgaatattttatggg 120  Q
    |||||||||||||||||||||||||  | ||||| ||||| ||||||||||||||    
T  13340593 atttcataaatgaaattttttagagggaccaaaaacctaaagaatattttatggg 13340647  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 9861708 - 9861623
Alignment:
Q  32 ctctattgtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatattttat 117  Q
    ||||| ||||||||| || |||||| || | || |||||||||||||||  ||||||||  | ||||||||||| |||||||||||    
T  9861708 ctctagtgtaatacttaatgtagagcagggactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttat 9861623  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 36874443 - 36874366
Alignment:
Q  39 gtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    |||||| |||| ||||||||||| || ||||||||||| | |||||||||||  | ||||| ||||| ||||||||||    
T  36874443 gtaatattcaatgtagagtagagactaatttcataaataacattttttagagggaccaaaaacctaaggaatatttta 36874366  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 31212433 - 31212365
Alignment:
Q  52 tagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatattttatggg 120  Q
    ||||| |||| || |||||||||||  ||||||||||||  | ||||||||||| ||||||||||||||    
T  31212433 tagagcagagactaatttcataaatagaattttttagagggaccaaaagcctaaagaatattttatggg 31212365  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 23485795 - 23485872
Alignment:
Q  39 gtaatactcaacgtagagtagaggctgatttcataaatgaaattttttagagaaatcaaaagcctaacgaatatttta 116  Q
    ||||||||||| ||||||  ||| || | |||||||||||||||| |||||||||  |||  ||||| ||||||||||    
T  23485795 gtaatactcaatgtagagcggagactaaattcataaatgaaatttgttagagaaactaaatacctaaagaatatttta 23485872  T

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