View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_120 (Length: 259)
Name: NF11278_low_120
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_120 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 24168659 - 24168899
Alignment:
| Q |
1 |
gttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccg |
100 |
Q |
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| T |
24168659 |
gttaactccgaaaataacgtttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccg |
24168758 |
T |
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| Q |
101 |
ttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttgt |
200 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||| |
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| T |
24168759 |
ttgtcattttcttccacggtggtggcttcacctatctttgcccctcctctatctactatgatgctttttgccgtagactctgccgggaaatatccgttgt |
24168858 |
T |
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| Q |
201 |
tgttgtctctgtcaactaccgcctcacaccggagcattgct |
241 |
Q |
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| T |
24168859 |
tgttgtctctgtcaactaccgcctcacaccggagcattgct |
24168899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 24179095 - 24179331
Alignment:
| Q |
1 |
gttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccg |
100 |
Q |
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| T |
24179095 |
gttaacgccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtcaccggagatggtggtgccaccaaagcaacctcccttcctg |
24179194 |
T |
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| Q |
101 |
ttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttgt |
200 |
Q |
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| T |
24179195 |
tcgtcattttcttccacggcggtggctacacttttctttctccttcctcgaacctctacgacgctgtttgccgtagactctgccgggaaatctccgctgt |
24179294 |
T |
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| Q |
201 |
tgttgtctctgtcaactaccgcctcacaccggagcat |
237 |
Q |
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| T |
24179295 |
cattgtctccgtcaactaccgacttacaccagagcat |
24179331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24188901 - 24189121
Alignment:
| Q |
1 |
gttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccg |
100 |
Q |
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|||||||||||||| || ||||||||||||||||||| || ||||||| ||||||||| || |||||||||| | |||||||| ||||||||||||| |
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| T |
24188901 |
gttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccaccaaaactacctcccttcccg |
24189000 |
T |
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| Q |
101 |
ttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttgt |
200 |
Q |
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| T |
24189001 |
tcgtcattttcttccacggtggtggcttcacttttctttcttcttcctcaaacctctacgatgcggtttgtcgtagactctgccgggaaatctccgctgt |
24189100 |
T |
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| Q |
201 |
tgttgtctctgtcaactaccg |
221 |
Q |
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||||||| ||||||||||| |
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| T |
24189101 |
cattgtctccgtcaactaccg |
24189121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 24151895 - 24152068
Alignment:
| Q |
64 |
ggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatg |
163 |
Q |
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|||||||||||||| || ||||||||||||||||| || |||||| |||||| ||||| ||||||| | ||||| ||||||||| ||||| | |||| |
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| T |
24151895 |
ggagatggtggtgccactaaaacaacctcccttcctgtcatcatttacttccacggtggtggcttcagttttctttccccctcctcaatctatcacgatg |
24151994 |
T |
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| Q |
164 |
ctttttgtcgtagactctgctgggaaatgtctgttgttgttgtctctgtcaactaccgcctcacaccggagcat |
237 |
Q |
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| T |
24151995 |
ctttatgccgtagactctgcagggaagttttcgctgttgtcgtctctgtcaactaccgccttacaccggagcat |
24152068 |
T |
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