View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_124 (Length: 254)
Name: NF11278_low_124
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_124 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 30506435 - 30506675
Alignment:
| Q |
11 |
gagagatgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagaattgacaatcattttactcctccattaatt-aagaaaaa |
109 |
Q |
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| T |
30506435 |
gagaaatgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagagttgacgatcatttcactcctccattaattaaagaaaaa |
30506534 |
T |
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| Q |
110 |
tgatatttaaacaattannnnnnnacaacttttgtaacaattttctcttttatactcatattttatattcactctctattgctttggtcattatattgtt |
209 |
Q |
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| T |
30506535 |
tgatatttaaataactatttttttacaact----tgacaattttctcttttatacttatattttgtattcactctctattgttttggccattatgtcgtc |
30506630 |
T |
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| Q |
210 |
aataaccaaatttctttatgtattttatttctctaagaggtattc |
254 |
Q |
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| T |
30506631 |
aataaccaaatttctttatgtattttagttctctaagaggtattc |
30506675 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 10731575 - 10731612
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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| T |
10731575 |
acaacttttgtaacaactttctcttttatactcatatt |
10731612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 48062086 - 48062123
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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| T |
48062086 |
acaacttttgtaacaactttctctcttatactcatatt |
48062123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 42853606 - 42853643
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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| T |
42853606 |
acaacttttgtaacaattttatctcttatactcatatt |
42853643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 26501521 - 26501484
Alignment:
| Q |
134 |
acaacttttgtaacaattttctcttttatactcatatt |
171 |
Q |
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| T |
26501521 |
acaacttttgtgacaattttctctttcatactcatatt |
26501484 |
T |
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