View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_134 (Length: 250)
Name: NF11278_low_134
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_134 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 5861075 - 5861313
Alignment:
| Q |
12 |
atgaatacattgaattaagccattttctcaaattattatcggcggttgacgggtctggggtctgtgtttatgctttatagctaaaaagtaaaactcataa |
111 |
Q |
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| T |
5861075 |
atgaatacattgaattaagccattttctcaaatgattatcggcggttgacgtgtctggtgtctgtgtatatgcttcatagctaaaaagtaaacctcataa |
5861174 |
T |
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| Q |
112 |
ctagaaattaaagtccaatttcactttaaaactataaaaattcaagtagcaaccgcaaagataaattttcagcaacagatctaacagtattaaactacaa |
211 |
Q |
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| T |
5861175 |
ctagaaattaaagtccaatttcacttcaaaactataaaaattcaagtagcaaccgcaaagataaattttcagcaacagatctaacagtattaaactacaa |
5861274 |
T |
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| Q |
212 |
tcgggagttagaaattcctgtaagtttatgaacagtaac |
250 |
Q |
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| T |
5861275 |
tcgggagttagaaattcctgtaagtttatgaacagtaac |
5861313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 11596469 - 11596510
Alignment:
| Q |
12 |
atgaatacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||| |
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| T |
11596469 |
atgattacattgaattatgtcattttctcaaattattatcgg |
11596510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 28296373 - 28296332
Alignment:
| Q |
12 |
atgaatacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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| T |
28296373 |
atgagtacattgaattatgtcattttctcaaattattatcgg |
28296332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 38134420 - 38134461
Alignment:
| Q |
12 |
atgaatacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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| T |
38134420 |
atgattacattgaattatgtcattttctcaaattattatcgg |
38134461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 18513255 - 18513296
Alignment:
| Q |
12 |
atgaatacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||| |
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| T |
18513255 |
atgattacattgaattatgtcattttctcaaattattatcgg |
18513296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 18571017 - 18570976
Alignment:
| Q |
12 |
atgaatacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||| |
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| T |
18571017 |
atgattacattgaattatgtcattttctcaaattattatcgg |
18570976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 40682022 - 40681986
Alignment:
| Q |
17 |
tacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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| T |
40682022 |
tacattgaattatgtcattttctcaaattattatcgg |
40681986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 10395488 - 10395452
Alignment:
| Q |
17 |
tacattgaattaagccattttctcaaattattatcgg |
53 |
Q |
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| T |
10395488 |
tacattgaattatgccattttctgaaattattatcgg |
10395452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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