View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_137 (Length: 249)
Name: NF11278_low_137
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_137 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30183014 - 30183252
Alignment:
| Q |
1 |
catcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30183014 |
catcatttccaagttttcaatctgtttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttctttttaattctgtaaa |
30183113 |
T |
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| Q |
101 |
ccaaaacaacaaagcaaaaatggaataaaacctaattgcatgattgaaatacaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30183114 |
ccaaaacaacaaagcaaaaatggaataaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaatttactgtaatgaaagt |
30183213 |
T |
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| Q |
201 |
gaaaatagatagatagggttcatgaccttaccgcctttg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30183214 |
gaaaatagatagatagggttcatgaccttaccgcctttg |
30183252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 44430945 - 44431074
Alignment:
| Q |
1 |
catcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430945 |
catcatttccaagttttcaatctgtttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
44431044 |
T |
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| Q |
101 |
ccaaaacaacaaagcaaaaatggaataaaa |
130 |
Q |
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| T |
44431045 |
ccaaaacaacaaagcaaaaatggaataaaa |
44431074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 44441367 - 44441471
Alignment:
| Q |
1 |
catcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44441367 |
catcatttccaagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
44441466 |
T |
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| Q |
101 |
ccaaa |
105 |
Q |
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||||| |
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| T |
44441467 |
ccaaa |
44441471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 44431114 - 44431202
Alignment:
| Q |
127 |
aaaacctaattgcatgattgaaatacaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagatag |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
44431114 |
aaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagatag |
44431202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 44441566 - 44441650
Alignment:
| Q |
131 |
cctaattgcatgattgaaatacaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagatag |
216 |
Q |
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|||| |||||| |||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
44441566 |
cctatttgcataattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagatag |
44441650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6180 - 6284
Alignment:
| Q |
1 |
catcatttccaagttttcaatctgtttcttgagttggtcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6180 |
catcatttccaagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaa |
6279 |
T |
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| Q |
101 |
ccaaa |
105 |
Q |
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||||| |
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| T |
6280 |
ccaaa |
6284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 6379 - 6463
Alignment:
| Q |
131 |
cctaattgcatgattgaaatacaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagatag |
216 |
Q |
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|||| |||||| |||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
6379 |
cctatttgcataattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagatag |
6463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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