View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_139 (Length: 249)
Name: NF11278_low_139
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_139 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 11352291 - 11352069
Alignment:
| Q |
12 |
agagactatgaaactgcacacaacacaccttagtaagtccagtgatctattgagggccatacaattgcaatcagactttgatccacgaatcacataggat |
111 |
Q |
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| T |
11352291 |
agagactatgaaattgcacacaacacaccttagtaagtccagtgatctattgagggccatacaattgcaatcagactttgatccacgaatcacataggat |
11352192 |
T |
|
| Q |
112 |
aacactcaatagattccttcc-aaaacccaactagatttcccatgattaccacataaatcaatgccaacaaagcactttcaacaccaaaaaatgaaacag |
210 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352191 |
aacactcaatagattccttcctgaaaccctactagatttcccatgattaccacataaatcaatgccaacaaagcactttcaacaccaaaaaatgaaacag |
11352092 |
T |
|
| Q |
211 |
cacaaatggtgctacaacaaaat |
233 |
Q |
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||||| ||||||||||||||||| |
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| T |
11352091 |
cacaagtggtgctacaacaaaat |
11352069 |
T |
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