View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_14 (Length: 621)
Name: NF11278_low_14
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 9 - 604
Target Start/End: Complemental strand, 5503208 - 5502609
Alignment:
| Q |
9 |
gagaagaagagtgaataaacctattaaaaggatggaagttgtgtactttgtcattgtgataaagggttttataggtatagatgtggagtcattggagagt |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5503208 |
gagaacaagagtgaataaacctattaaaaggatggaagttgtgtactttgtcattgtgataaagggttttataggtatagatgtggagtcattggagagt |
5503109 |
T |
|
| Q |
109 |
ttgttacatgtggtgcgccctcacattagttacatgcctttgaggcgttacatagcccttggagtgttaattgcatgggacggaccaatgcctctggact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5503108 |
ttgttacatgtggtgcgccctcacattagttacatgcctttgaggcgttacatagcccttggagtgttaattgcatgggacggaccaatgcctctggact |
5503009 |
T |
|
| Q |
209 |
tggttcagcagtgtgttcggttcagagtgcttcatggttcaatgtatagagtat----cgtggactttgaaccgattcaaaacatgaatcaataaaaaac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5503008 |
tggttcagcagtgtgttcggttcagagtgcttcatggttcaatgtatagagtatcgtacgtggactttgaaccgattcaaaacatgaatcaataaaaaac |
5502909 |
T |
|
| Q |
305 |
aaggtgcatgtttggtactgtgtttgcaaaatagagtttgatagaaatcacgataaaataccatgttaattagtgtagaagttagtatttagagtttttg |
404 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5502908 |
aaggtgcatgtttggtactgtgtttgtaaaatagagtttgatagaaattacgataaaataccatgttaa----tgtagaagttagtatttagagtttttg |
5502813 |
T |
|
| Q |
405 |
aaaatcacgacaaaaatacattggaaagtttaaaaaatgtgcttc-----gttgcaaacggggaaaccaaacacacactaagcatttgtaaatttcctaa |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
5502812 |
aaaatcacgacaaaaatacattggaaagtttaaaaaatgtgcttctgtatgttgcaaacggagaaaccaaacacaca-taagcatttgtaaatttcctaa |
5502714 |
T |
|
| Q |
500 |
ctttaccaattgcagttaacacaaatcgttagatttttccactttcacattagttataatttggttttagttttaatcatgattgatattgacgatgtct |
599 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5502713 |
ctttaccaattgcagttaacacaaattgttagatttttccactttcacattagttataatttggttttagttttaatcatgattgatattgacgatgtct |
5502614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 45847726 - 45847770
Alignment:
| Q |
381 |
agaagttagtatttagagtttttgaaaatcacgacaaaaatacat |
425 |
Q |
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| T |
45847726 |
agaagttagtatttagagtttctgaaaattacggtaaaaatacat |
45847770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 45675832 - 45675730
Alignment:
| Q |
313 |
tgtttggtactgtgtttgcaaaatagagtttgatagaaatcacgataaaataccatgttaattagtgtagaagttagtatttagagtttttgaaaatcac |
412 |
Q |
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||||||||| || |||| |||| ||||||||||||||||||| ||||| |||| |||| | |||||||||||||||| ||||| ||| |||||| |
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| T |
45675832 |
tgtttggtattgcttttgaaaaacggagtttgatagaaatcacggtaaaaaaccacgtta----gcgtagaagttagtatttgaagtttctgagaatcac |
45675737 |
T |
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| Q |
413 |
gacaaaa |
419 |
Q |
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||||||| |
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| T |
45675736 |
gacaaaa |
45675730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 411
Target Start/End: Original strand, 16118502 - 16118583
Alignment:
| Q |
326 |
gtttgcaaaatagagtttgatagaaatcacgataaaataccatgttaattagtgtagaagttagtatttagagtttttgaaaatca |
411 |
Q |
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|||||||||||||| |||||| |||||||||| |||| |||| | |||| ||||||| |||||||| ||| ||||| |||||| |
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| T |
16118502 |
gtttgcaaaatagaatttgatggaaatcacgacaaaaaaccacg----ttagcgtagaagctagtatttggagcttttggaaatca |
16118583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 32312806 - 32312919
Alignment:
| Q |
315 |
tttggtactgtgtttgcaaaatagagtttgatagaaatcacgataaaataccatgttaattagtgtagaagttagtatttagagtttttgaaaatcacga |
414 |
Q |
| |
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|||||||| | |||||||||| || |||||| ||||||||| |||| ||||||||| | ||||||| |||||| | ||| ||||| |||||||| |
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| T |
32312806 |
tttggtacggcgtttgcaaaacggactttgatggaaatcacggcaaaaaaccatgtta----gcgtagaagctagtatctggagcttttggaaatcacgg |
32312901 |
T |
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| Q |
415 |
caaaaatacattggaaag |
432 |
Q |
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| T |
32312902 |
caaaaacacattggaaag |
32312919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 41146130 - 41146191
Alignment:
| Q |
312 |
atgtttggtactgtgtttgcaaaatagagtttgatagaaatcacgataaaataccatgttaa |
373 |
Q |
| |
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|||||||| | ||||||||||||| ||||||||||||||||||| |||| |||| ||||| |
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| T |
41146130 |
atgtttggcattgtgtttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaa |
41146191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 12429728 - 12429772
Alignment:
| Q |
312 |
atgtttggtactgtgtttgcaaaatagagtttgatagaaatcacg |
356 |
Q |
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| T |
12429728 |
atgtttggtacagtgtttgcaaaacagtgtttgatggaaatcacg |
12429772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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