View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_143 (Length: 246)
Name: NF11278_low_143
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_143 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 34647603 - 34647702
Alignment:
| Q |
147 |
aagaagttaaattaaaccattcaaattgatacagaagataatcaaatctaagaatcgaggaggaacatactcacaaatctcaaatcaataccactaaatc |
246 |
Q |
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| T |
34647603 |
aagaagttaaattagaccatttaaattgacacaaaagagaatcaaatctaagaatcaaagaggaacatactcacagatctcaagtcaataccactaaatc |
34647702 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 34647470 - 34647536
Alignment:
| Q |
11 |
atggacatcaggggaattttttggcacatcattcatacattgaagaattaatgatcttgcatttcta |
77 |
Q |
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| T |
34647470 |
atggacaccaggggaatttttgggcacatcattcatacattgaagaattaatgatcttgcaattcta |
34647536 |
T |
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