View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_153 (Length: 240)
Name: NF11278_low_153
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_153 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 12400745 - 12400946
Alignment:
| Q |
24 |
aaaataaacaaattactcaactttgccctagcaaatagaagaaaggcataccaattttgataggttccaatgagtccacgttcatatatgacaccaagag |
123 |
Q |
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| T |
12400745 |
aaaataaacaaattactcaactttgccctagcaaatagaagcaaggcataccaattttgataggttccaatgagtccacgttcatatatgacaccaagag |
12400844 |
T |
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| Q |
124 |
tattgatttcagcctcaacaggaacaatgttcatgacccaaacaggatcatcaactagtgcagctgcaaagcctcccaagtaagaattcatatcaagaag |
223 |
Q |
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| T |
12400845 |
tattgatttcagcctcaacaggaacaatgttcatgacccaaacaggatcatcaaccagtgcagctgcaaagcctcccaagtaagaattcatatcaagaag |
12400944 |
T |
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| Q |
224 |
at |
225 |
Q |
| |
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|| |
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| T |
12400945 |
at |
12400946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 28638463 - 28638627
Alignment:
| Q |
56 |
aaatagaagaaaggcataccaattttgataggttccaatgagtccacgttcatatatgacaccaagagtattgatttcagcctcaacaggaacaatgttc |
155 |
Q |
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| T |
28638463 |
aaatggaagaaagacttaccagttctgatatgttccgatcaatccgcgttcataaacgacaccaagtgtgttgatctcagcctcgaccggaacaacattc |
28638562 |
T |
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| Q |
156 |
atgacccaaacaggatcatcaactagtgcagctgcaaagcctcccaagtaagaattcatatcaag |
220 |
Q |
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| T |
28638563 |
atgacccaaactggatcatcaatcattgcagctgcaaatcctcccaagtaagcattcatatcaag |
28638627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48179564 - 48179520
Alignment:
| Q |
1 |
ttttaggaaaaataacacgttgtaaaataaacaaattactcaact |
45 |
Q |
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|||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
48179564 |
ttttaggaaaaataacacgttgtacaataagcaagttactcaact |
48179520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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