View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_158 (Length: 237)
Name: NF11278_low_158
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_158 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 55967199 - 55967419
Alignment:
| Q |
1 |
ttcatgctctcttcgataaaatcagacatgccctctttttcccttcgataatcaatcattaaaaacgaaaataaattcttcagtatcaagaaagcatttt |
100 |
Q |
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| T |
55967199 |
ttcatgctctcttcgataaaatcagacatgccctctttttcccttcgataatcaatcattaaaaaggaaaaaaaattcttcagtatcaagaaagcatttt |
55967298 |
T |
|
| Q |
101 |
gaacggaataagtaattctatagagaaatatcaagaaaatatttttcaagggtcacgcaggataataatttaggaaaaattatacaacaatgaaattaag |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55967299 |
gaacagaataagtaattctatagagaaatatcaagaaaatatttttcaagggtcacgcaggataataatttaggaaaaattatacaacaatgaaattaag |
55967398 |
T |
|
| Q |
201 |
tcaaggaatgagagatacttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
55967399 |
tcaaggaatgagagatacttt |
55967419 |
T |
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