View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_160 (Length: 229)
Name: NF11278_low_160
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_160 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 35523096 - 35523291
Alignment:
| Q |
19 |
ctatctataggtgaaagtatatatgggaaatgggtggaactcagattttagcaaaacacactttgatacattctctcctccggacttttacacaaaggtg |
118 |
Q |
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| T |
35523096 |
ctatctataggtgaaagtatacatgggaaatgggtggaactcagattttagcaaaacacactttgatacattctctcctccggacttttacacaaaggtg |
35523195 |
T |
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| Q |
119 |
agtgctaatcagctatgtagcaccgacacatgtgattaaattcattttcttaaattatgcctaatgttaatgttattgtcgtatctagtgtctgtg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35523196 |
agtgctaatcagctatgtagcaccgacacatgtgattaaattcattttcttaaattatgcctaatgttaatgttattgtcgtatctagtgtttgtg |
35523291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 35509802 - 35509878
Alignment:
| Q |
41 |
atgggaaatgggtggaactcagattttagcaaaacacactttgatacattctctcctccggacttttacacaaaggt |
117 |
Q |
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|||||| |||| |||| || ||||||||| ||||||||||||| |||||||| || ||||||||||||||||| |
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| T |
35509802 |
atgggacatggttggagcttagattttagtcccacacactttgatatgttctctcccccagacttttacacaaaggt |
35509878 |
T |
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