View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_161 (Length: 229)
Name: NF11278_low_161
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_161 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 18701519 - 18701308
Alignment:
| Q |
21 |
gactgatatactagttttaaaatgtttcttttaaaattcaaagattaccacatacttct---gccaatgaagcctctgactgcttcaatcttacattctc |
117 |
Q |
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| T |
18701519 |
gactgatatactagttttaaaatgtttcttttaaaattcaaagattaccacatacttctcctgccaatgaagcctctgactgcttcaatcttacattctc |
18701420 |
T |
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| Q |
118 |
ctcaatctcctctaactgcttttcataacgctctatatgattatttctttgatgaaaaagtcgagaaaaggctccttgcttaatcttctgcttagtggga |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18701419 |
ctcaatctccgctaactgcttttcataacgctctatatgattatttctttggtgaaaaagtcgagaaaaggctccttgcttaatcttctccttagtggga |
18701320 |
T |
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| Q |
218 |
tttggtcgtgat |
229 |
Q |
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| T |
18701319 |
tctggtcgtgat |
18701308 |
T |
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