View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_163 (Length: 228)
Name: NF11278_low_163
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_163 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 48034410 - 48034608
Alignment:
| Q |
13 |
agcataggcagaaatccaagggtagtattatcctcagtaatttttgcttgcattgctttatcaatgtgacttctgatgcatagtttgatttgccaattgc |
112 |
Q |
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| T |
48034410 |
agcataggcagaaatccaagggtagtattatcctcagtaatttttgcttgcattgctttatcaatgtgacttctgatgcatagtttgatttgccaattgc |
48034509 |
T |
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| Q |
113 |
atatatctcacaatagaatgttgttaacattctctcatcagaatacatagagattttaatggatatggatgttagagggaaatattgtcattgacttgt |
211 |
Q |
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| T |
48034510 |
atatatctcacaatagaatgttgttaacattctctcatcagaatacatagagattttaatggatatggatgttagagggaaatattgtcattgacttgt |
48034608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 29814027 - 29813971
Alignment:
| Q |
58 |
gcttgcattgctttatcaatgtgacttctgatgcatagtttgatttgccaattgcat |
114 |
Q |
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| T |
29814027 |
gcttgcattgctttatcagtgtggtttctgatgcatagtttgattttcctattgcat |
29813971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 1173268 - 1173316
Alignment:
| Q |
58 |
gcttgcattgctttatcaatgtgacttctgatgcatagtttgatttgcc |
106 |
Q |
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| T |
1173268 |
gcttgcattgctttataaaagtggtttctgatgtatagtttgatttgcc |
1173316 |
T |
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