View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_168 (Length: 211)
Name: NF11278_low_168
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_168 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 33169962 - 33170138
Alignment:
| Q |
19 |
acctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169962 |
acctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttgga |
33170061 |
T |
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| Q |
119 |
gtagcatcaaatttacaattcaaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctt |
195 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33170062 |
gtagcatcaaatttgctgttcaaatgatctctataagctttattgtcaacaaacatattggcacttactcctttctt |
33170138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 33154240 - 33154416
Alignment:
| Q |
19 |
acctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttgga |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33154240 |
acctcctccagcaaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttgga |
33154339 |
T |
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| Q |
119 |
gtagcatcaaatttacaattcaaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctt |
195 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | || |||||||| |
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| T |
33154340 |
gtagcatcgaatttacaattcaaatgatctctatatgctttgttgtcaacaaatatattggcagtgacccctttctt |
33154416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 33144500 - 33144676
Alignment:
| Q |
19 |
acctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaagcaactgcagcactttccatgtctgttgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |||| |
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| T |
33144500 |
acctcctccagctaaatcagacaatgctctaatggcaatgaaaggtattttgtgttggaaacaaactaaggcaacagaagcactttccatgtctactgga |
33144599 |
T |
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| Q |
119 |
gtagcatcaaatttacaattcaaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctt |
195 |
Q |
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|||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33144600 |
gtagcatcaaatttcaagttcaaaaaatctctataagctttgttgtcaacaaacacattggcacttactcctttctt |
33144676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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