View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_17 (Length: 604)
Name: NF11278_low_17
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 7488205 - 7488790
Alignment:
| Q |
1 |
ggacaaagatcataaatggaagcaaggaagagagcatatgtgtattcatgaggtagaagtttatggaaattcattttgaacgaataaaattgnnnnnnnn |
100 |
Q |
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| T |
7488205 |
ggacaaagatcataaatggaagcaaggaagacagcatctgtgtattcatgaggtagaagcttatggaaattcatattgaacgaataaaattgaaaaaaaa |
7488304 |
T |
|
| Q |
101 |
gatgaattgagtttcggtggagtgacttatttataatcctttagggcactaactagagtggttaactaaccaaaccacataactaaagtggttaagtaac |
200 |
Q |
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| T |
7488305 |
gatgaattgagtttcggtggagtgacttatttataatcttctagggcattaactagagtggttaactaaccaaaccacataactaaagtggttaagtaac |
7488404 |
T |
|
| Q |
201 |
tatatctgtctaactaaaacttaattaactccacgtaactttctactattttaatagggcatctccaatggaggtatataagcgagtattatagaatgaa |
300 |
Q |
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|||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
7488405 |
tataactgcctaactaaaacttaactaactccacgtaactttctactattttaacatggcatccccaatggaggtatataagcgagtttcatagaatgaa |
7488504 |
T |
|
| Q |
301 |
ccatgatgtggcagtgcggatagcaaagaaattggtgaagtacttatgtatcttaaataagctatcatatcatcaaagttgcataagaaaaatcattgaa |
400 |
Q |
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| T |
7488505 |
ccatgatgtggcagtgcggatagcaaagaaattggtgaagtactgaagtattttaaataagctatcatatcatcaaagttaaataagaaaaatcatcgaa |
7488604 |
T |
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| Q |
401 |
agcaagttacataaaagttgagtgtaatttaaaaaatcattaaaaatgagtttcacatacttaattttttattttattatctttggagcaaaaatatgat |
500 |
Q |
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| T |
7488605 |
agcaagttacataaaa-ttgagtgtaatttaaaaaaccattaaaaatgagtttcacatacttaattttttattttattatctttggagcaaaaatatgat |
7488703 |
T |
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| Q |
501 |
tgagttgtataagtgtgatatgatattgttgagagccacttaatattggcatgaaattaatttcgagttccttacaaacttgccact |
587 |
Q |
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| T |
7488704 |
tgagttgtacaagtgtgatatgatattgttgagagccacttaatattggtacgaaattaatttcgagttccttacaaacttgccact |
7488790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 547
Target Start/End: Original strand, 46769602 - 46769765
Alignment:
| Q |
378 |
gttgcataagaaaaatcattgaaagcaagttacataaaagttgagtgtaatttaaaaaatcattaaaaatgagtttcacatacttaattttttattttat |
477 |
Q |
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|||||||| ||||||||||| ||| |||||||||||||||||||| || | |||||| ||| |||| ||||||||| | | || |||| ||||| |
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| T |
46769602 |
gttgcatacgaaaaatcattcaaaatgagttacataaaagttgagtgcaaataaaaaaaccataaaaactgagtttcataaagttg----tttaatttat |
46769697 |
T |
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| Q |
478 |
tatctttggagcaaaaatatgattgagttgtataagtgtgatatgatattgttgagagccacttaatatt |
547 |
Q |
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| T |
46769698 |
tatcattggagtaaaa-tatgtttgagttgcataagtgtgatatgacattg-tgggagccacttaatatt |
46769765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 35328492 - 35328547
Alignment:
| Q |
491 |
aaaatatgattgagttgtataagtgtgatatgatattgttgagagccacttaatatt |
547 |
Q |
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| T |
35328492 |
aaaatatgcttgagttgcataagtgtgatatgacattg-tgagagccatttaatatt |
35328547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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