View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_19 (Length: 596)
Name: NF11278_low_19
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 153 - 578
Target Start/End: Original strand, 45003820 - 45004246
Alignment:
| Q |
153 |
ctgagcaatcatcatgcaatgaaccaataaccgggccagcccaaacaagtaaatagataacccaaagcccaaagcaaggactcnnnnnnnnnnnnn-gta |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45003820 |
ctgagcaatcatcatgcaatgaaccaataaccgggccagcccaaacaagtaaatagataacccaaagcccaaagcaaggactcaaaaaaaaaaaaaagta |
45003919 |
T |
|
| Q |
252 |
tcttataattcgcggtgctcgttacgcaccataactccggaagctccatcaatggcgactctaactccaatttgttcaataccaacgaaactgaatttga |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45003920 |
tcttataattcgcggtgctcgttacgcaccataactcaggaagctccatcaatggcgactctaactccaatttgttcaataccaacgaaactgaatttga |
45004019 |
T |
|
| Q |
352 |
atatccaacaaaaacaacacaatctcaatttcccacttttcaatttcaaaattgcaaagcaaaattcaagaacttcaaccacagtaatccgttcatcctc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45004020 |
atatccaacaaaaacaacacaatctcaatttcccacttttcaatttcaaaattgcaaagcaaaattcaagaacttcaaccacagtaatccgttcatcctc |
45004119 |
T |
|
| Q |
452 |
taccgctaaccagaaccagtcttctccgggattatactccgcccagaaattcgaactcaccgcttcaaacgtcgatctcgttctcgaagatgttcgccct |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45004120 |
taccgctaaccagaaccagtcttctccgggattatactccgcccagaaattcgaactcaccgcttcaaacgtcgatctcgttctcgaagatgttcgccct |
45004219 |
T |
|
| Q |
552 |
tacctcatctctgacggaggaaacgtc |
578 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
45004220 |
tacctcatctctgacggaggaaacgtc |
45004246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 45003589 - 45003741
Alignment:
| Q |
1 |
gatgatcctaatttcttgataataagagtgaaaatatgcaaatgacaaactatgcgatgagaaattttctcaatatgcacttcattttcgcttcgattag |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
45003589 |
gatgatcctaatttcttgctaataagagtgaaaatatgcaaatgacaaactatgcgatgagaaagtttctcaatatgcacttcattttcgcttcgattag |
45003688 |
T |
|
| Q |
101 |
atcgtaactctcaattagctgtttttgtctgtattggatcgtaactctcaatc |
153 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45003689 |
atcgtaactctcaattagctgtttttgtctgtattggattgtaactctcaatc |
45003741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 273 - 578
Target Start/End: Complemental strand, 14392446 - 14392141
Alignment:
| Q |
273 |
ttacgcaccataactccggaagctccatcaatggcgactctaactccaatttgttcaataccaacgaaactgaatttgaatatccaacaaaaacaacaca |
372 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |
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|
| T |
14392446 |
ttacgcaccataactctgtaagctctgtcaatggcgactctaactccaatttgttcaataccagcggaactgaatttgagtatccaacaaaaacaacaca |
14392347 |
T |
|
| Q |
373 |
atctcaatttcccacttttcaatttcaaaattgcaaagcaaaattcaagaacttcaaccacagtaatccgttcatcctctaccgctaaccagaaccagtc |
472 |
Q |
| |
|
|| ||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||| |
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|
| T |
14392346 |
atttcaattttgcacttttcaatttaaaaaatccaaagcaaaattcaagaacttcaaccacaataatccacttgtcctttaccgctaaccagaaccagtc |
14392247 |
T |
|
| Q |
473 |
ttctccgggattatactccgcccagaaattcgaactcaccgcttcaaacgtcgatctcgttctcgaagatgttcgcccttacctcatctctgacggagga |
572 |
Q |
| |
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|||| |||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
14392246 |
ttctatgggattatactccgccaagaaattcgacctcacagctccaaacgtcgatctcgttctcgaagatgttcgtccttacctcatctctgacggagga |
14392147 |
T |
|
| Q |
573 |
aacgtc |
578 |
Q |
| |
|
|||||| |
|
|
| T |
14392146 |
aacgtc |
14392141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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