View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_23 (Length: 569)
Name: NF11278_low_23
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 94 - 566
Target Start/End: Original strand, 45090007 - 45090479
Alignment:
| Q |
94 |
ccgccgttaatcctccaaccaaaccgcacctcaattgttgtgactattttattttatagtaaacttttcttcaattttttcacaccgtaaaaacagatac |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45090007 |
ccgccgttaatcctccaaccaaaccgcacctcaattgttgtgactattttattttatagtaaacttttcttcaattttttcacaccgtaaaaacagatac |
45090106 |
T |
|
| Q |
194 |
tccctaccgctccccgccacaaatcaccggctgcagcctcccaagcgccaccatagaccccacacccttctccctcactcacgcaaaccgcgaacgttcc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45090107 |
tccctaccgctccccgccacaaatcaccggctgcagcctcccaagcgccaccacagaccccacacccttctccctcactcacgcaaaccgcgaacgttcc |
45090206 |
T |
|
| Q |
294 |
ttctttctcgcgcgtgaaacctccaaaagtaacatagcatcaacacaggtaattgaatcttcccaaaatctctattgtgcatttttagggtttttggatt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45090207 |
ttctttctcgcgcgtgaaacctccaaaagtaacatagcatcaacacaggtaattgaatcttcccaaaatctctattgtgcatttttagggtttttggatt |
45090306 |
T |
|
| Q |
394 |
tctcaattgtttatatctctattcaattgattacgcaattcggactaggcttaatatatttaatcattgcaggtcttatgaaacgaggataccgagaatc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45090307 |
tctcaattgtttatatctctattcaattgattacgcaattcggactaggcttaatatatttaattattgcaggtcttatgaaacgaggataccgagaatc |
45090406 |
T |
|
| Q |
494 |
tccttcaagctcatttggtcaacctcattctaaacctagacataattctcaaggtattgctctctgctcctcc |
566 |
Q |
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| T |
45090407 |
tccttcaagctcatttggtcaacctcattctaaacctagacataattctcaaggtactgctctttgcacctcc |
45090479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 335 - 566
Target Start/End: Original strand, 11137 - 11376
Alignment:
| Q |
335 |
aacacaggtaattgaatcttcccaaaatctctattgtgcatttttagggtttttggatttc-tcaattgtttatatctct--------attcaattgatt |
425 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| |
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| T |
11137 |
aacacaagtaattgaatcttctcaaaatctctatcgtgcatttttagggtttttggattttgtcaatt-tctatatctctctaattgtattcaattgatt |
11235 |
T |
|
| Q |
426 |
acgcaattcggactaggcttaatatatttaatcattgcaggtcttatgaaacgaggataccgagaatctccttcaagctcatttggtcaacctcattcta |
525 |
Q |
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|||||||| | | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
11236 |
acgcaatttgtattattcttaatatatttaatcattgtaggtcttatgaaacgagggtaccgagaatctccttcaacctcattcggttcacctcattcta |
11335 |
T |
|
| Q |
526 |
aacctagacataattctcaaggtattgctctctgctcctcc |
566 |
Q |
| |
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| T |
11336 |
aacctagacataattctcaaggtattgctctttgcacctcc |
11376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 335 - 566
Target Start/End: Original strand, 18898 - 19137
Alignment:
| Q |
335 |
aacacaggtaattgaatcttcccaaaatctctattgtgcatttttagggtttttggatttc-tcaattgtttatatctct--------attcaattgatt |
425 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| |
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| T |
18898 |
aacacaagtaattgaatcttctcaaaatctctatcgtgcatttttagggtttttggattttgtcaatt-tctatatctctctaattgtattcaattgatt |
18996 |
T |
|
| Q |
426 |
acgcaattcggactaggcttaatatatttaatcattgcaggtcttatgaaacgaggataccgagaatctccttcaagctcatttggtcaacctcattcta |
525 |
Q |
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|||||||| | | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
18997 |
acgcaatttgtattattcttaatatatttaatcattgtaggtcttatgaaacgagggtaccgagaatctccttcaacctcattcggttcacctcattcta |
19096 |
T |
|
| Q |
526 |
aacctagacataattctcaaggtattgctctctgctcctcc |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
19097 |
aacctagacataattctcaaggtattgctctttgcacctcc |
19137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 19531 - 19600
Alignment:
| Q |
497 |
ttcaagctcatttggtcaacctcattctaaacctagacataattctcaaggtattgctctctgctcctcc |
566 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
19531 |
ttcaacctcattcggttcacctcattctaaacctagacataattctcaaggtattgctctttgcacctcc |
19600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 548
Target Start/End: Original strand, 11770 - 11821
Alignment:
| Q |
497 |
ttcaagctcatttggtcaacctcattctaaacctagacataattctcaaggt |
548 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
11770 |
ttcaacctcattcggttcacctcattctaaacctagacataattctcaaggt |
11821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 11081 - 11125
Alignment:
| Q |
263 |
ctccctcactcacgcaaaccgcga-acgttccttctttctcgcgc |
306 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
11081 |
ctccctcactcacgcaaaccgggacacgttccttctttctcgcgc |
11125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 18842 - 18886
Alignment:
| Q |
263 |
ctccctcactcacgcaaaccgcga-acgttccttctttctcgcgc |
306 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
18842 |
ctccctcactcacgcaaaccgggacacgttccttctttctcgcgc |
18886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 29665235 - 29665203
Alignment:
| Q |
93 |
accgccgttaatcctccaaccaaaccgcacctc |
125 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29665235 |
accgccgttaatcctccaaccaaaccgcacctc |
29665203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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