View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_27 (Length: 550)
Name: NF11278_low_27
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 8028564 - 8029100
Alignment:
| Q |
1 |
tatatatatgtgcggtacctttgcgttttcatcaaatcaagattcgaaacaaataaataagctatagagaaagattcctcnnnnnnnnnnnnnctataga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8028564 |
tatatatatgtgcggtacctttgcgttttcatcaaatcaagattcgaaacaaataaataagctatagagaaagattcctcaaaaaacaaaaaactataga |
8028663 |
T |
|
| Q |
101 |
gaatgagtgaggtggggaagagagaaacaaggatgaaagtggaacaagtactccacatgaatggaggaattggagaaacaagctattcaaataactcctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8028664 |
gaatgagtgaggtggggaagagagaaacaaggatgaaagtggaacaagtactccacatgaatggaggaattggagaaacaagctattcaaataactcctt |
8028763 |
T |
|
| Q |
201 |
acttcaggtaaaatatcacacgtaaaatatcaattcatattacaaaatttagacaacatatatataagttataacactgtattttactatatttgtctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8028764 |
acttcaggtaaaatatcacacgtaaaatatcaattcatattacaaaatttagacaacatatatataagttataacactgtattttactatatttgtttta |
8028863 |
T |
|
| Q |
301 |
cgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8028864 |
cgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaa |
8028963 |
T |
|
| Q |
401 |
ggctaggtattgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaattagtaaaggaactttaccaagaacataa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
8028964 |
ggctaggtattgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaaattagttgataaactttgccaagaacataa |
8029063 |
T |
|
| Q |
501 |
tcacgagtctccagaataccaagtcttcatgaatgat |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8029064 |
tcacgagtctccagaataccaagtcttcatgaatgat |
8029100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 7298245 - 7298122
Alignment:
| Q |
335 |
tttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgg |
434 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||||||| |||||||||||||| |
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| T |
7298245 |
tttctttgacaaagccaataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctgg |
7298146 |
T |
|
| Q |
435 |
gccaaacactttgtttgtgatatc |
458 |
Q |
| |
|
|||||||||||||||||| |||| |
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|
| T |
7298145 |
accaaacactttgtttgtggtatc |
7298122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 32709950 - 32709889
Alignment:
| Q |
409 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
470 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||| |
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|
| T |
32709950 |
attgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaa |
32709889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 32629116 - 32629054
Alignment:
| Q |
148 |
gtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
210 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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|
| T |
32629116 |
gtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
32629054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 32710179 - 32710113
Alignment:
| Q |
144 |
acaagtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
210 |
Q |
| |
|
||||||| | |||||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| |
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|
| T |
32710179 |
acaagtattgcacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggta |
32710113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 32704240 - 32704200
Alignment:
| Q |
409 |
attgcagatttgggttgttcttctgggccaaacactttgtt |
449 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
32704240 |
attgcagatttgggttgctcttatggaccaaacactttgtt |
32704200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 27736976 - 27736914
Alignment:
| Q |
409 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaa |
471 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||| |||| |||||||| ||| |||||||| |
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|
| T |
27736976 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 27737676 - 27737620
Alignment:
| Q |
154 |
cacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
210 |
Q |
| |
|
|||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||| |
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| T |
27737676 |
cacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggta |
27737620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 5811657 - 5811596
Alignment:
| Q |
409 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
470 |
Q |
| |
|
|||||||| |||||||| |||| ||| ||||||||||| || ||||| |||||| ||||||| |
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| T |
5811657 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaa |
5811596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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