View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_3 (Length: 781)
Name: NF11278_low_3
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 142 - 766
Target Start/End: Original strand, 33542974 - 33543598
Alignment:
| Q |
142 |
caaaaaataaattggtttatttgtggaagattcattgtgagttgtttggtgatcttggaagcaagtgaaaaatatctgctactaaaagtctaaaacaatc |
241 |
Q |
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| T |
33542974 |
caaaaaataaattggtttatttgtggaagattcattgtgagttgtttggtgatcttggaagcaagtgaaaaatatctgctactaaaagtctaaaacaatc |
33543073 |
T |
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| Q |
242 |
aaatttacttggctttggttgaagcagaaagaaaaacaatttagtctaaacactacttaactcatattaatagcactcactgatttatcatccaatctgt |
341 |
Q |
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| T |
33543074 |
aaatttacttggctttggttgaagcagaaagaaaaacactttagtataaacactacttaactcatattaatagcactcactgatttatcatccaatctgt |
33543173 |
T |
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| Q |
342 |
tggggaagttcttcagttttcatggtattttgttatgattgaacttttcttgtactttttgttggtttcctgtgaaataatgaatttcatagtgttgagt |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543174 |
tggggaagttcttcagttttcatggtattttgttatgattgaacttttcttgtactttttgttggtttcctgtgaaataatgaatttcatagtgttgagt |
33543273 |
T |
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| Q |
442 |
tataatgcttgaattcagttgattcttgcgaaaaaattatgtttgtttaaggtaacataacttcttgtaattgcagggtttctgcttgtgtttcaaggct |
541 |
Q |
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| T |
33543274 |
tataatgcttgaattcagttgattcttgcgaaaaaattatgtttgtttaaggtaacataacttcttgtaattgcagggtttctgcttgtgtttcaaggct |
33543373 |
T |
|
| Q |
542 |
tcaattttgagagaactccaatgcttttgtagaatataatnnnnnnnnnnnnnnnnnnnnctatggtatctgtgttttttgttttggttactattttact |
641 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33543374 |
tcaattttgagagaactccaatgcttctttagaatataataacaaaacaaaacaaaaacactatggtatctgtgttttttgttttggttactattttact |
33543473 |
T |
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| Q |
642 |
ttctataaatcattcagaacagcttcaatcctcacacactcaaaccctcctaagaattcaacaacaattgaattttccttcagctttaagcaattggaat |
741 |
Q |
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| T |
33543474 |
ttctataaatcattcagaacagcttcaatcctcacacactcaaaccctcctaagaattcaacaacaattgaattttccttcagctttaagcaattggaat |
33543573 |
T |
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| Q |
742 |
aactccacagatttttgcaacacag |
766 |
Q |
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| T |
33543574 |
aactccacagatttttgcaacacag |
33543598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 33542850 - 33542910
Alignment:
| Q |
19 |
gtagttgtccactttctgaatatcttttggattttttctattatggtgtgaggtatagaag |
79 |
Q |
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| T |
33542850 |
gtagttgtccactttctgaatatcttttggattttttccattatggtgtgaggtatagaag |
33542910 |
T |
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