View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_31 (Length: 507)
Name: NF11278_low_31
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 8070259 - 8069973
Alignment:
| Q |
1 |
gtggattttgaaggcaactaaaagaggtaagattattggttcaagaactattggtaacttatatttcccatccattcgtaatatattattagtagataga |
100 |
Q |
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| T |
8070259 |
gtggattttggaggcaaccaaacgaggtaagatcattggatcaagaactattagtaacttatatttcccatccattactaatatattattagtagataga |
8070160 |
T |
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| Q |
101 |
ctcaaacataatcatatgaacatataagtcaactgtgtgatagtaattataatgtgatgttcaataagacatcttttaaagtaataatcaatctgatgga |
200 |
Q |
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| T |
8070159 |
ctcaaacataatcatatgaacatataagtcaactgtgtgatagtaattataatgtgatgttcaataagacatcttttaaagtaatcatcaatctgatgga |
8070060 |
T |
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| Q |
201 |
tctattttcttcattggtaagaggaaaaacagtgttggagtttttgcaatttgttggatttggacaataggaggagtattgagttct |
287 |
Q |
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| T |
8070059 |
tctattttcttcattggtaagaggaaaaacagtgttggggtttttgcaatttgttggatttggacaataggaggagtattgagttct |
8069973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 406 - 487
Target Start/End: Complemental strand, 8069854 - 8069768
Alignment:
| Q |
406 |
ccagtaatgtcctaatcatctattctgctggcccacgtggat-----catatctctaaattgatgtcgagtcatggcttaaattgct |
487 |
Q |
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| T |
8069854 |
ccagtaatgtcctaatcatctattctgctggcccacgtggatcaagccatatctctaaattgatgtcgagtcatggcttaaattgct |
8069768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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