View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_32 (Length: 507)

Name: NF11278_low_32
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_32
NF11278_low_32
[»] chr1 (17 HSPs)
chr1 (170-489)||(5876212-5876531)
chr1 (1-146)||(39869891-39870035)
chr1 (26-150)||(39869332-39869456)
chr1 (395-489)||(5872732-5872826)
chr1 (10-150)||(36682174-36682315)
chr1 (27-151)||(36681525-36681650)
chr1 (106-150)||(19790840-19790884)
chr1 (101-151)||(15601467-15601517)
chr1 (105-150)||(2071475-2071520)
chr1 (70-121)||(19534096-19534147)
chr1 (105-147)||(49359642-49359684)
chr1 (108-151)||(2070786-2070829)
chr1 (11-93)||(33082208-33082290)
chr1 (90-128)||(14235973-14236011)
chr1 (90-128)||(14237371-14237409)
chr1 (105-147)||(49361980-49362022)
chr1 (105-150)||(50546061-50546106)
[»] chr3 (11 HSPs)
chr3 (26-151)||(31595784-31595909)
chr3 (1-151)||(31595134-31595270)
chr3 (11-150)||(25081455-25081595)
chr3 (69-142)||(38018633-38018707)
chr3 (105-150)||(48058275-48058320)
chr3 (106-151)||(54516961-54517006)
chr3 (95-147)||(29749328-29749380)
chr3 (70-121)||(36864564-36864615)
chr3 (90-128)||(11617438-11617476)
chr3 (105-150)||(36244153-36244198)
chr3 (105-146)||(48058962-48059003)
[»] chr8 (15 HSPs)
chr8 (10-151)||(37550201-37550343)
chr8 (27-151)||(37550867-37550992)
chr8 (1-150)||(39320931-39321081)
chr8 (20-144)||(16664639-16664764)
chr8 (28-112)||(22589713-22589798)
chr8 (1-112)||(7089756-7089868)
chr8 (32-150)||(23017264-23017384)
chr8 (95-151)||(36697681-36697737)
chr8 (95-150)||(16723683-16723738)
chr8 (105-137)||(44495131-44495163)
chr8 (81-151)||(37550998-37551068)
chr8 (105-150)||(24287617-24287662)
chr8 (102-150)||(23546145-23546193)
chr8 (102-150)||(23546906-23546954)
chr8 (95-151)||(43306685-43306741)
[»] chr4 (10 HSPs)
chr4 (10-150)||(33351370-33351511)
chr4 (27-151)||(33352035-33352160)
chr4 (90-142)||(49574732-49574784)
chr4 (90-150)||(19638103-19638163)
chr4 (107-150)||(21436558-21436601)
chr4 (105-142)||(33581140-33581177)
chr4 (90-148)||(39832014-39832072)
chr4 (105-150)||(43428476-43428521)
chr4 (114-150)||(20422946-20422982)
chr4 (105-148)||(49648239-49648283)
[»] chr2 (5 HSPs)
chr2 (8-151)||(42112276-42112420)
chr2 (10-45)||(1729616-1729651)
chr2 (107-148)||(25616852-25616893)
chr2 (105-150)||(30266321-30266366)
chr2 (105-142)||(30784884-30784921)
[»] scaffold0434 (1 HSPs)
scaffold0434 (25-112)||(12741-12829)
[»] chr7 (3 HSPs)
chr7 (95-142)||(29064747-29064794)
chr7 (105-151)||(19068464-19068510)
chr7 (105-150)||(45432966-45433011)
[»] chr6 (5 HSPs)
chr6 (105-151)||(15997538-15997584)
chr6 (107-151)||(20756414-20756458)
chr6 (90-150)||(20508611-20508671)
chr6 (105-142)||(4279094-4279131)
chr6 (105-142)||(4284352-4284389)
[»] chr5 (8 HSPs)
chr5 (105-150)||(33574029-33574074)
chr5 (95-151)||(35424265-35424321)
chr5 (105-148)||(10470062-10470105)
chr5 (90-150)||(14098496-14098556)
chr5 (105-137)||(30576042-30576074)
chr5 (85-146)||(14099228-14099290)
chr5 (106-150)||(10470849-10470894)
chr5 (105-148)||(26015501-26015545)
[»] scaffold0285 (1 HSPs)
scaffold0285 (81-151)||(17518-17588)
[»] scaffold1370 (1 HSPs)
scaffold1370 (103-150)||(202-249)
[»] scaffold0006 (1 HSPs)
scaffold0006 (105-151)||(223806-223852)
[»] scaffold0159 (1 HSPs)
scaffold0159 (105-150)||(28154-28199)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 170 - 489
Target Start/End: Original strand, 5876212 - 5876531
Alignment:
Q  170 ttgttgttggaatcccgaacactctacttattcactttaagatatttttaaatcatttactaaacttaaaatctgaactatctggtttcaatcaacgacc 269  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  5876212 ttgttgttggaatcccgaacactccacttgttcactttaagatgtttttaaatcatttactgaacttaaaatctgaactatctaatttcaatcaacgacc 5876311  T
Q  270 tttagtacacactgaccgcagggttttgtgactaaagggaatctagggctgattatttaattttggtgaaaaacgagtcttataaaaaatagtgtataca 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5876312 tttagtacacactgaccgcagggttttgtgactaaagggaatctagggctgattatttaattttggtgaaaaatgagtcttataaaaaatagtgtataca 5876411  T
Q  370 tataaacctcctattgtgattaatatagttatagattcttttgttatgcagttctacgaccacttctttgattggggactgaaggagcagataacaaatt 469  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5876412 tataaacctactattgtgattaatatagttatagattcttttgttatgcagttctacgaccacttctttgattggggactgaaggagcagataacaaatt 5876511  T
Q  470 tgactgtaattagacagagg 489  Q
    ||||||||||||||||||||    
T  5876512 tgactgtaattagacagagg 5876531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39869891 - 39870035
Alignment:
Q  1 ggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaagcatcttaaccgttggttttaatcagatggttgttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  39869891 ggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaatctgaagcatcttaaccgttggttttaatcagat-gttgttaa 39869989  T
Q  101 ttactcctctcaccctctcatttaaaaactcctctcacttgatatg 146  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  39869990 ttactcgtctcaccctctcatttaaaaactcctctcacttgatatg 39870035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 39869456 - 39869332
Alignment:
Q  26 aaattaatcacatggttttagtgggttttaaagccgaagcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctcatttaa 125  Q
    |||||||||||||| ||||| |   ||||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  39869456 aaattaatcacatgattttaatatattttaaagctgaagcatcttaaccattggttttaatcaaatagttgttaattactcctctcaccctctcatttaa 39869357  T
Q  126 aaactcctctcacttgatatgccct 150  Q
    |||||| ||| | ||||||||||||    
T  39869356 aaactcatctaatttgatatgccct 39869332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 5872732 - 5872826
Alignment:
Q  395 tagttatagattcttttgttatgcagttctacgaccacttctttgattggggactgaaggagcagataacaaatttgactgtaattagacagagg 489  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||    
T  5872732 tagttatggattattttgttatgcagttctatgaccacttctttgattggggactgaaggatcagatagcaaaattgactgcaattagacagagg 5872826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 36682174 - 36682315
Alignment:
Q  10 gcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcct 108  Q
    |||||||||||||||||||||||||| |||||||||||   ||||||||  ||| |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  36682174 gcttgagaagaaggggaaattaatcatatggttttagtatattttaaagttgaaagcatcttagccgttggatttaatcggatggttgttaattactcct 36682273  T
Q  109 ctcaccctctca-tttaaaaactcctctcacttgatatgccct 150  Q
    ||||  |||||| | ||| ||||||||||| ||||||||||||    
T  36682274 ctca-tctctcactataacaactcctctcatttgatatgccct 36682315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 36681650 - 36681525
Alignment:
Q  27 aattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctca-ttta 124  Q
    ||||||||||||||||||| |   ||||||||| ||| |||||||||||||||| |||||||  |||||| ||||||||||||||||  |||||| | ||    
T  36681650 aattaatcacatggttttattatattttaaagctgaaagcatcttaaccgttggatttaatcgaatggttattaattactcctctca-tctctcactata 36681552  T
Q  125 aaaactcctctcacttgatatgccctc 151  Q
    | |||||||||||||||||||| ||||    
T  36681551 acaactcctctcacttgatatgtcctc 36681525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 19790884 - 19790840
Alignment:
Q  106 cctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  19790884 cctctcaccctctcattttaaaactcctctcacttgatatgccct 19790840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 15601467 - 15601517
Alignment:
Q  101 ttactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  15601467 ttactcctctcatcctctcatttaaaaagccctctcacttgatatgccctc 15601517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 2071475 - 2071520
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  2071475 tcctctcaccctctcattttaaaagtcctctcacttgatatgccct 2071520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 19534147 - 19534096
Alignment:
Q  70 taaccgttggttttaatcagatggttgttaattactcctctcaccctctcat 121  Q
    ||||||||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  19534147 taaccgttggtttaaatctgatggttattatttactcctctcaccctctcat 19534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 49359684 - 49359642
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgc 147  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  49359684 tcctctcaccctctcatttaaaaactcctctcatttgaaatgc 49359642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 2070829 - 2070786
Alignment:
Q  108 tctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||||||||||| |||| || |||||||||||||||||||    
T  2070829 tctcaccctctcattttaaaagtcttctcacttgatatgccctc 2070786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 33082290 - 33082208
Alignment:
Q  11 cttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccg-aagcatcttaaccgttggttttaatcagatgg 93  Q
    |||||||||||| | |||| ||||||||||||||| | ||||||||||  | ||| ||||||||||||| |||||||| |||||    
T  33082290 cttgagaagaagagaaaat-aatcacatggttttaattggttttaaagttgaaaggatcttaaccgttgattttaatctgatgg 33082208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 14236011 - 14235973
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaa 128  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  14236011 atggctgttatttactcctctcaccctctcatttaaaaa 14235973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 14237371 - 14237409
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaa 128  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  14237371 atggatgttatttactcctctcaccctctcatttaaaaa 14237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 49361980 - 49362022
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgc 147  Q
    |||||||||| |||||||||||||||||||||| |||| ||||    
T  49361980 tcctctcaccttctcatttaaaaactcctctcatttgaaatgc 49362022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 50546061 - 50546106
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||| |||||||||||| |||| |||||| ||||||||||||||    
T  50546061 tcctcttaccctctcattttaaaagtcctcttacttgatatgccct 50546106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 31595784 - 31595909
Alignment:
Q  26 aaattaatcacatggttttagtgggttttaaagccgaagcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctcatttaa 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31595784 aaattaatcacatggttttagtgggttttaaagctgaagcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctcatttaa 31595883  T
Q  126 aaactcctctcacttgatatgccctc 151  Q
    ||||||||||||||||||||||||||    
T  31595884 aaactcctctcacttgatatgccctc 31595909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31595270 - 31595134
Alignment:
Q  1 ggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaagcatcttaaccgttggttttaatcagatggttgttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||              |||||||||    
T  31595270 ggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagctgaagcatcttaaccgtt--------------ggttgttaa 31595185  T
Q  101 ttactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31595184 ttactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 31595134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 25081455 - 25081595
Alignment:
Q  11 cttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcctc 109  Q
    ||||||||||||| |||| |||||||||||||||| |   ||||||||| ||| |||||||||||||||||||||||| ||||||| | ||| | |||||    
T  25081455 cttgagaagaaggagaaaataatcacatggttttaattaattttaaagctgaaagcatcttaaccgttggttttaatctgatggttataaatcaatcctc 25081554  T
Q  110 tcaccctctca-tttaaaaactcctctcacttgatatgccct 150  Q
    |||  |||||| | ||| ||||||||||||||||||||||||    
T  25081555 tca-tctctcactataacaactcctctcacttgatatgccct 25081595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 38018707 - 38018633
Alignment:
Q  69 ttaaccgttggttttaatcagatggttgttaattactcctctcaccctctcatt-taaaaactcctctcacttga 142  Q
    |||||||| || ||||||| ||||| |||||||||||||||||||||||||||| ||   |||||||||||||||    
T  38018707 ttaaccgtaggatttaatcggatggctgttaattactcctctcaccctctcattgtagccactcctctcacttga 38018633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 48058320 - 48058275
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  48058320 tcctctcaccctctcattttaaaagtcctctcacttgatatgccct 48058275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 54517006 - 54516961
Alignment:
Q  106 cctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||    
T  54517006 cctctcaccctctcatttaaaaactcctctcatttgaaatgccctc 54516961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 29749328 - 29749380
Alignment:
Q  95 tgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgc 147  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||| ||||    
T  29749328 tgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgc 29749380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 36864564 - 36864615
Alignment:
Q  70 taaccgttggttttaatcagatggttgttaattactcctctcaccctctcat 121  Q
    ||||||||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  36864564 taaccgttggtttaaatctgatggttattatttactcctctcaccctctcat 36864615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 11617476 - 11617438
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaa 128  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  11617476 atggttgttatttactcctctcaccctctcatttaaaaa 11617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 36244153 - 36244198
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||||||||||| || ||||| |||| |||||||    
T  36244153 tcctctcaccctctcatttaaaaaatcatctcatttgaaatgccct 36244198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 48058962 - 48059003
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatg 146  Q
    ||||||||||||||||||| |||| |||||| ||||||||||    
T  48058962 tcctctcaccctctcattttaaaattcctcttacttgatatg 48059003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 37550343 - 37550201
Alignment:
Q  10 gcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcct 108  Q
    |||| ||||||||||||||||||||| |||||||||||   ||||||||  ||| |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  37550343 gcttaagaagaaggggaaattaatcatatggttttagtatattttaaagttgaaagcatcttagccgttggatttaatcggatggttgttaattactcct 37550244  T
Q  109 ctcaccctctca-tttaaaaactcctctcacttgatatgccctc 151  Q
    ||||  |||||| | ||| ||||||||||| |||||||||||||    
T  37550243 ctca-tctctcactataacaactcctctcatttgatatgccctc 37550201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 37550867 - 37550992
Alignment:
Q  27 aattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctca-ttta 124  Q
    ||||||||||||||||||| |   ||||||||| ||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||  |||||| | ||    
T  37550867 aattaatcacatggttttattatattttaaagctgaaagcatcttaaccgttggatttaatcggatggttattaattactcctctca-tctctcactata 37550965  T
Q  125 aaaactcctctcacttgatatgccctc 151  Q
    | |||||||||||||||||||| ||||    
T  37550966 acaactcctctcacttgatatgtcctc 37550992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39321081 - 39320931
Alignment:
Q  1 ggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgtta 99  Q
    |||||| | |||||||||||| |||| ||||||||| ||||||||||   ||||||||| ||| |||||||| || |||| ||||||| |||||||| ||    
T  39321081 ggaagccacgcttgagaagaatgggagattaatcacgtggttttagtatattttaaagctgaaagcatcttagccattggatttaatcggatggttgcta 39320982  T
Q  100 attactcctctcaccctctca-tttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||  |||||| | ||| || || ||||||||||||||||||    
T  39320981 attactcctctca-tctctcactataacaagtcatctcacttgatatgccct 39320931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 16664764 - 16664639
Alignment:
Q  20 aaggggaaattaatcacatggttttagtgggttttaaagc-cgaagcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctct 118  Q
    ||||||||||||||||||||||||||   |||||||| |  | |||||| ||||||||||| ||||||||||||| || |||| |||||||||| |||||    
T  16664764 aaggggaaattaatcacatggttttaacaggttttaatgatcaaagcattttaaccgttggatttaatcagatggatgctaatcactcctctca-cctct 16664666  T
Q  119 catt-taaaaactcctctcacttgata 144  Q
    |||| |||||| |||||| ||||||||    
T  16664665 cattataaaaagtcctctaacttgata 16664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 22589798 - 22589713
Alignment:
Q  28 attaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcctctca 112  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||||| ||||||||||||  ||||| ||||||||||||||||||    
T  22589798 attaatcacatggttttaataggttttaaagctgaaagcatcttaactgttggttttaatgtgatggatgttaattactcctctca 22589713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 7089756 - 7089868
Alignment:
Q  1 ggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagc-cgaagcatcttaaccgttggttttaatcagatggttgtta 99  Q
    |||||| | |||||||||||| |||| ||||||||||||||||||||   |||||||||   |||||||||| || |||| ||||||| |||||||| ||    
T  7089756 ggaagccacgcttgagaagaatgggagattaatcacatggttttagtatattttaaagctaaaagcatcttagccattggatttaatcggatggttgcta 7089855  T
Q  100 attactcctctca 112  Q
    |||||| ||||||    
T  7089856 attacttctctca 7089868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 23017384 - 23017264
Alignment:
Q  32 atcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctca-tttaaaaac 129  Q
    |||||||||||||| | ||||||||||  ||| |||||||||||||||||||||||| ||||  || ||||| |||||||||  |||||| | ||| |||    
T  23017384 atcacatggttttaattggttttaaagttgaaagcatcttaaccgttggttttaatctgatgcctgataattgctcctctca-tctctcactataacaac 23017286  T
Q  130 tcctctcac-ttgatatgccct 150  Q
    ||||||||| ||||||||||||    
T  23017285 tcctctcactttgatatgccct 23017264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 36697737 - 36697681
Alignment:
Q  95 tgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||| ||| ||||    
T  36697737 tgttatttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgtcctc 36697681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 16723738 - 16723683
Alignment:
Q  95 tgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||| ||||||||||||||||||||||| |||| |||||||| |||| |||||||    
T  16723738 tgttatttactcctctcaccctctcattttaaaagtcctctcatttgaaatgccct 16723683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 44495131 - 44495163
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctca 137  Q
    |||||||||||||||||||||||||||||||||    
T  44495131 tcctctcaccctctcatttaaaaactcctctca 44495163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 37551068 - 37550998
Alignment:
Q  81 tttaatcagatggttgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||  |||||| ||| | |||||||||| |||||||||||||||  ||||||| |||| ||||||||    
T  37551068 tttaatctaatggttcttattaactcctctcatcctctcatttaaaaagccctctcatttgaaatgccctc 37550998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 24287617 - 24287662
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||    
T  24287617 tcctctcaccctctcatttaaaaaaccctctcatttgaaatgccct 24287662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 23546193 - 23546145
Alignment:
Q  102 tactcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||||||||||||||   ||||||| |||| |||||||    
T  23546193 tactcctctcaccctctcatttaaaatgccctctcatttgaaatgccct 23546145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 23546906 - 23546954
Alignment:
Q  102 tactcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||||||||||||||   |||||| |||| |||||||    
T  23546906 tactcctctcaccctctcatttaaaaagctctctcatttgaaatgccct 23546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 43306741 - 43306685
Alignment:
Q  95 tgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    ||||| ||||||||  ||||||||||||| |||| |||||||| |||| ||||||||    
T  43306741 tgttatttactccttccaccctctcattttaaaaatcctctcatttgaaatgccctc 43306685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 33351511 - 33351370
Alignment:
Q  10 gcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcct 108  Q
    |||| ||||||||||||||||||||| |||||||||||   ||||||||  ||| |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  33351511 gcttaagaagaaggggaaattaatcatatggttttagtatattttaaagttgaaagcatcttagccgttggatttaatcggatggttgttaattactcct 33351412  T
Q  109 ctcaccctctca-tttaaaaactcctctcacttgatatgccct 150  Q
    ||||  |||||| | ||| ||||||||||| ||||||||||||    
T  33351411 ctca-tctctcactataacaactcctctcatttgatatgccct 33351370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 33352035 - 33352160
Alignment:
Q  27 aattaatcacatggttttagtgggttttaaagccgaa-gcatcttaaccgttggttttaatcagatggttgttaattactcctctcaccctctca-ttta 124  Q
    ||||||||||||||||||| |   ||||||||| ||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||  |||||| | ||    
T  33352035 aattaatcacatggttttattatattttaaagctgaaagcatcttaaccgttggatttaatcggatggttattaattactcctctca-tctctcactata 33352133  T
Q  125 aaaactcctctcacttgatatgccctc 151  Q
    | ||||| |||||||||||||| ||||    
T  33352134 acaactcatctcacttgatatgtcctc 33352160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 49574732 - 49574784
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaactcctctcacttga 142  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  49574732 atggttgttatttactcctctcaccctctcatttaaaaagtcctctcatttga 49574784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 19638163 - 19638103
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||| | ||| |||||||||||||||||||||||| |||||||| |||| |||||||    
T  19638163 atggttgtgatttaatcctctcaccctctcatttaaaaattcctctcatttgaaatgccct 19638103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 21436601 - 21436558
Alignment:
Q  107 ctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  21436601 ctctcaccctctcatttaaaaactcctctcatttgaaatgccct 21436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 33581140 - 33581177
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttga 142  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  33581140 tcctctcaccctctcatttaaaaactcctctcatttga 33581177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 39832014 - 39832072
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgcc 148  Q
    |||||| ||||| | |||||||| ||||||||||||||| | ||||||||||| |||||    
T  39832014 atggttattaatgagtcctctcatcctctcatttaaaaagtgctctcacttgaaatgcc 39832072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 43428521 - 43428476
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||||||||||| |||||||| || | |||||||    
T  43428521 tcctctcaccctctcatttaaaaagtcctctcatttaaaatgccct 43428476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 20422982 - 20422946
Alignment:
Q  114 cctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||| || ||||||||||||||||||    
T  20422982 cctctcatttaaaaaatcatctcacttgatatgccct 20422946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 49648239 - 49648283
Alignment:
Q  105 tcctctcaccctctcatt-taaaaactcctctcacttgatatgcc 148  Q
    |||||||||||||||||| |||  |||||||||||||||||||||    
T  49648239 tcctctcaccctctcattataactactcctctcacttgatatgcc 49648283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 42112276 - 42112420
Alignment:
Q  8 atgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagccg-aagcatcttaaccgttggttttaatcagatggttgttaattactc 106  Q
    |||||||||||||| |||| ||||||||||||||||||||   ||||||||| | |||||||||| || |||| ||||||| |||||||| |||||||||    
T  42112276 atgcttgagaagaatgggagattaatcacatggttttagtatattttaaagctgaaagcatcttagccattggatttaatcggatggttgctaattactc 42112375  T
Q  107 ctctcaccctctca-tttaaaaactcctctcacttgatatgccctc 151  Q
    ||||||  |||||| | ||| || ||||||||||||||||||||||    
T  42112376 ctctca-tctctcactataagaagtcctctcacttgatatgccctc 42112420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 1729651 - 1729616
Alignment:
Q  10 gcttgagaagaaggggaaattaatcacatggtttta 45  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1729651 gcttgagaagaaggggaaattaatcacattgtttta 1729616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 25616893 - 25616852
Alignment:
Q  107 ctctcaccctctcatttaaaaactcctctcacttgatatgcc 148  Q
    |||||||||||||||||||||| |||||||| |||| |||||    
T  25616893 ctctcaccctctcatttaaaaagtcctctcatttgaaatgcc 25616852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 30266366 - 30266321
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||||||||||| | |||||| |||| |||||||    
T  30266366 tcctctcaccctctcatttaaaaagtgctctcatttgaaatgccct 30266321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 30784921 - 30784884
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttga 142  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  30784921 tcctctcaccctctcatttaaaaagtcctctcatttga 30784884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 12741 - 12829
Alignment:
Q  25 gaaattaatcacatggttttagtgggttttaaagccgaagc-atcttaaccgttggttttaatcagatggttgttaattactcctctca 112  Q
    |||||||||||||||||||||||   ||||||||  ||| | ||||||||| |||| ||||||| |||||||||||||| |||||||||    
T  12741 gaaattaatcacatggttttagtatattttaaagttgaaaccatcttaaccattggatttaatcggatggttgttaattgctcctctca 12829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 29064794 - 29064747
Alignment:
Q  95 tgttaattactcctctcaccctctcatttaaaaactcctctcacttga 142  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  29064794 tgttatttactcctctcaccctctcatttaaaaactcctctcatttga 29064747  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 19068510 - 19068464
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  19068510 tcctctcaccctctcatttaaaaagtcctctcatttgaaatgccctc 19068464  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 45432966 - 45433011
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||    
T  45432966 tcctctcatcctctcatttaaaaaatcctctcacttgaaatgccct 45433011  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 15997538 - 15997584
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  15997538 tcctctcaccctctcatttaaaaactcctctcatttgaaatgccctc 15997584  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 20756414 - 20756458
Alignment:
Q  107 ctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  20756414 ctctcaccctctcatttaaaaactcctctcatttgaaatgccctc 20756458  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 20508671 - 20508611
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||| | ||| |||||||||||||||||||||||| || ||||| |||| |||||||    
T  20508671 atggttgtgatttaatcctctcaccctctcatttaaaaagtcatctcatttgaaatgccct 20508611  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 4279131 - 4279094
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttga 142  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  4279131 tcctctcaccctctcatttaaaaagtcctctcatttga 4279094  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 4284352 - 4284389
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttga 142  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  4284352 tcctctcaccctctcatttaaaaagtcctctcatttga 4284389  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 33574029 - 33574074
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  33574029 tcctctcaccctctcattttaaaagtcctctcacttgatatgccct 33574074  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 35424321 - 35424265
Alignment:
Q  95 tgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    ||||| ||||||||||||||||||||||| |||| |||||||| |||| ||||||||    
T  35424321 tgttatttactcctctcaccctctcattttaaaagtcctctcatttgaaatgccctc 35424265  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 10470105 - 10470062
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgcc 148  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  10470105 tcctctcatcctctcatttaaaaaatcctctcacttgatatgcc 10470062  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 14098556 - 14098496
Alignment:
Q  90 atggttgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||| | ||| |||||||||||||||||||||||| |||||||| || | |||||||    
T  14098556 atggttgtgatttaatcctctcaccctctcatttaaaaagtcctctcatttaaaatgccct 14098496  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 30576042 - 30576074
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctca 137  Q
    |||||||||||||||||||||||||||||||||    
T  30576042 tcctctcaccctctcatttaaaaactcctctca 30576074  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 14099228 - 14099290
Alignment:
Q  85 atcagatggttgttaattactcctctcaccctctca-tttaaaaactcctctcacttgatatg 146  Q
    ||||||||||| ||||||| ||||||||| ||||||   |||| |||||||||||||||||||    
T  14099228 atcagatggttattaattattcctctcactctctcacaataaatactcctctcacttgatatg 14099290  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 10470849 - 10470894
Alignment:
Q  106 cctctcaccctctcat-ttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||    
T  10470849 cctctcaccctctcatattaaatagtcctctcacttgatatgccct 10470894  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 26015545 - 26015501
Alignment:
Q  105 tcctctcaccctctcatttaaaa-actcctctcacttgatatgcc 148  Q
    |||||||||||||||||||||   |||||||||||||||||||||    
T  26015545 tcctctcaccctctcatttaagttactcctctcacttgatatgcc 26015501  T

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Target: scaffold0285 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 17518 - 17588
Alignment:
Q  81 tttaatcagatggttgttaattactcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    |||||||  |||||| ||| | |||||||||| ||||||||||||||| |||||||| |||| ||||||||    
T  17518 tttaatctaatggttcttattaactcctctcatcctctcatttaaaaaatcctctcatttgaaatgccctc 17588  T

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Target: scaffold1370 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 249 - 202
Alignment:
Q  103 actcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||| ||||||||||||||| |||||||| |||| |||||||    
T  249 actcctctcatcctctcatttaaaaagtcctctcatttgaaatgccct 202  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 223852 - 223806
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccctc 151  Q
    ||||| ||||||||||||| |||| |||||| |||||||||||||||    
T  223852 tcctcccaccctctcattttaaaagtcctcttacttgatatgccctc 223806  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 28199 - 28154
Alignment:
Q  105 tcctctcaccctctcatttaaaaactcctctcacttgatatgccct 150  Q
    |||||||||||||||||||||||| |||||| | |||| |||||||    
T  28199 tcctctcaccctctcatttaaaaagtcctcttatttgaaatgccct 28154  T

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