View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_33 (Length: 498)

Name: NF11278_low_33
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_33
NF11278_low_33
[»] chr1 (2 HSPs)
chr1 (1-479)||(14741634-14742112)
chr1 (5-95)||(50427812-50427902)
[»] chr4 (3 HSPs)
chr4 (1-95)||(39655607-39655701)
chr4 (15-95)||(23424762-23424842)
chr4 (15-81)||(39429640-39429706)
[»] chr5 (2 HSPs)
chr5 (1-95)||(9923678-9923772)
chr5 (15-95)||(1970069-1970149)
[»] chr3 (1 HSPs)
chr3 (1-95)||(43768424-43768518)
[»] chr2 (1 HSPs)
chr2 (15-95)||(20991696-20991776)
[»] chr8 (2 HSPs)
chr8 (1-61)||(7054482-7054542)
chr8 (18-81)||(42345812-42345875)


Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 14742112 - 14741634
Alignment:
Q  1 gagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattggttgg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742112 gagaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattggttgg 14742013  T
Q  101 aaagatgttggaaaaagtgtagtaagttggatacgtgagagtatgaaatctatggcttttgagattgcttctgctgagttacttgaagatttggagtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14742012 aaagatgttggaaaaagtgtagtaagttggatacgtgagagtatgaaatctatggcatttgagattgcttctgctgagttacttgaagatttggagtttt 14741913  T
Q  201 ctgagatgaaacaaagaatgggacctggtcttacgtttgttattcaagcacaaccttatttgaatgctgttcctatgccacttggtcttgaagttacttg 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741912 ctgaaatgaaacaaagaatgggacctggtcttacgtttgttattcaagcacaaccttatttgaatgctgttcctatgccacttggtcttgaagttacttg 14741813  T
Q  301 tttgaaagcttgtactcattatccaactctttttgatcattttcaaagagagttgcgtgatgttcttcaagatatgcagagtaaaggtttggttgaagat 400  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741812 tttgaaagcttgtactcattatcctactctttttgatcattttcaaagagagttgcgtgatgttcttcaagatatgcagagtaaaggtttggttgaagat 14741713  T
Q  401 tggcgtcaaactcagtcttggaagttgcttaaggagcttgctaattcaggnnnnnnnctttctctttgagcctgtttgg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||    
T  14741712 tggcgtcaaactcagtcttggaagttgcttaaggagcttgctaattcaggtttttttctttctctttgagcttgtttgg 14741634  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 50427812 - 50427902
Alignment:
Q  5 agaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    |||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||| |||||||||||||    
T  50427812 agaaaaaatgatgcaacaatagaaattcaactaccctttgggaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattg 50427902  T

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Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39655701 - 39655607
Alignment:
Q  1 gagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||||||||||| |||||||||||||    
T  39655701 gagaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaataagaatgttcatgtccatgagaatattggtgaccctattg 39655607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 23424842 - 23424762
Alignment:
Q  15 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||    
T  23424842 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattg 23424762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 39429640 - 39429706
Alignment:
Q  15 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  39429640 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatat 39429706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9923772 - 9923678
Alignment:
Q  1 gagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||    
T  9923772 gagaagaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattg 9923678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 1970149 - 1970069
Alignment:
Q  15 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||| ||||||| |||||||||||||    
T  1970149 atgcagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgtccataagaatattggtgaccctattg 1970069  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43768424 - 43768518
Alignment:
Q  1 gagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||    
T  43768424 gagaagaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattg 43768518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 20991696 - 20991776
Alignment:
Q  15 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctattg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||    
T  20991696 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattg 20991776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7054482 - 7054542
Alignment:
Q  1 gagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaat 61  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  7054482 gagaagaaaaaatgatgcagcaatagaaattcaactaccctttaagaatatgaacaagaat 7054542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 42345812 - 42345875
Alignment:
Q  18 cagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatat 81  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||    
T  42345812 cagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgtccatgagaatat 42345875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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