View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_35 (Length: 494)
Name: NF11278_low_35
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 44909831 - 44910327
Alignment:
| Q |
1 |
tctctacgttcctccttcatctcgtaaaagccacgacaatttcgaagacaacgaccttgataacatcgagtacgatgatgattccagagaagaacaatca |
100 |
Q |
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| T |
44909831 |
tctctacgttcctccttcatctcgtaaaagccacgacaatttcgaagacaacgaccttgataacatcgagtacgatgatgattccagagaagaacaatca |
44909930 |
T |
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| Q |
101 |
aacaatgatgataacgccggtg---gtggtggtggtgaagaggacgaaatcgatccattagatgcattcatggaaggaatacacgaggagatgaaatcgg |
197 |
Q |
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| T |
44909931 |
aacaatgatgataacgccggtggtggtggtggtggtgaagaggacgaaatcgatccattagatgcattcatggaaggaatacacgaggagatgaaatcgg |
44910030 |
T |
|
| Q |
198 |
cgccgccaccgaagccgaaggagaaggtggaagatagatataaagatgatttagaggatgatccaatggagagttttttgagggcaaagaaggatttagg |
297 |
Q |
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| T |
44910031 |
cgccgcccccgaagccgaaggagaaggtggaagatagatataaagatgatttagaggatgatccaatggagagttttttgagggcgaagaaggatttagg |
44910130 |
T |
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| Q |
298 |
gttgacgttggcgtcggatgcgttgcatgctggatatgattctgatgaggaggtttatgccgctgctaaagctgtggatgctggtttgattgattatgat |
397 |
Q |
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| T |
44910131 |
gttgacgttggcgtcggatgcgttgcatgctggatatgattctgatgaggaggtttatgctgctgctaaagctgtggatgctggtttgattgattatgat |
44910230 |
T |
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| Q |
398 |
tctgatgataatcctattgttcttgataagaagaaaattgaacctattgctcctcttgatcataatgagattgattatgaaccgtttaataaggatt |
494 |
Q |
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| T |
44910231 |
tctgatgataatcctattgttcttgataagaagaaaattgaacctattgctcctcttgatcataatgaaattgattatgaaccgtttaataaggatt |
44910327 |
T |
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