View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_37 (Length: 473)
Name: NF11278_low_37
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 11160038 - 11159790
Alignment:
| Q |
18 |
atttggtattaagtctaaatatattggaactggaagtaacatttgtgtagctgaagtatgatagcaaatgtgtacgtaaaaaagaagaagaagcattttg |
117 |
Q |
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| T |
11160038 |
atttcgtattaagtctaaatatattggaactggaagtaacatttgtgtagctgaagtgtgatagcaaatgtgtacgtaaaaaagaagaagaagcattttg |
11159939 |
T |
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| Q |
118 |
tttggaagaaagaacagtacatgcacaatgtcttctggaatttgggaccagaaactgaacggataaaattcggtcaggtcagtggccactcactggcaat |
217 |
Q |
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| T |
11159938 |
tttggaagaaagaacagtacatgcacaatgtcttctggaatttgggaccagaaactgaacggataaaattcggtcaggtcagtggccactcactggctat |
11159839 |
T |
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| Q |
218 |
taggtgattggctgttttggttaggttatatgacaatccattttcatca |
266 |
Q |
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| T |
11159838 |
taggtgattggctgttttggttaggtcgtatgacaatccattttcatca |
11159790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 264 - 441
Target Start/End: Complemental strand, 11159677 - 11159495
Alignment:
| Q |
264 |
tcaaataattgacatcattcccctaaaaaagattgacaacattattattattactttattaatactaatatataagagtggattgcgtgt----ggttag |
359 |
Q |
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| T |
11159677 |
tcaaataattgacatcattcccctaaaaaagatcgacaacattattattactactttattaatactaatatataagagtggattgcgtgtggttggttag |
11159578 |
T |
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| Q |
360 |
gaagctcaaagaaattatgatattcatttggtggtggatggctgtgaagatatatgttcaggtta-aattgcagccatgcaca |
441 |
Q |
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| T |
11159577 |
gaagctcaaagaaattatgatattcatttggtggtggatggctgtgaagatatattttcaggttacaattgcagccatgcaca |
11159495 |
T |
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