View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_low_43 (Length: 451)
Name: NF11278_low_43
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 37429705 - 37429269
Alignment:
| Q |
20 |
tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37429705 |
tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacaccgcc |
37429606 |
T |
|
| Q |
120 |
ttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37429605 |
ttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatgctgttcttcctctatctttgt |
37429506 |
T |
|
| Q |
220 |
ggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccacca-----ttattttcaaacctcacacacctcactacc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37429505 |
ggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattattttcaaacctcacacacctcactacc |
37429406 |
T |
|
| Q |
315 |
tttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttccttt----aataaccta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
37429405 |
tttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagtattttcctttaataaataaccta |
37429306 |
T |
|
| Q |
411 |
ataggccaagttccatcatcattgtttcatctcactc |
447 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37429305 |
acaggccaagttccatcatcattgtttcatctaactc |
37429269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37697741 - 37697462
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| | || |
|
|
| T |
37697741 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcaggtg |
37697642 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| | |||| ||||| || ||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
37697641 |
aaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattttgatgggatggttcctctatctttgtggaacctcac |
37697542 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
|||||||||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37697541 |
tcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37697462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37824849 - 37824570
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| | | |||| || || | || |
|
|
| T |
37824849 |
gatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcaggtg |
37824750 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
37824749 |
aaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattttgatgggattgttcctctatctttgtggaacctcac |
37824650 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
||||||||| | || ||||| || || || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37824649 |
ccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37824570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 37400018 - 37400297
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | || |
|
|
| T |
37400018 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtg |
37400117 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| | |||| ||||| || ||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
37400118 |
aaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctcac |
37400217 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
||||||||| | || ||||| || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37400218 |
ccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37400297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37534054 - 37533775
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| | |||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | || |
|
|
| T |
37534054 |
gatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcaggtg |
37533955 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| ||| ||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
37533954 |
aaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctcac |
37533855 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
||||||||| | || || || || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37533854 |
ccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37533775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37640826 - 37640547
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| | |||| ||||| | || |
|
|
| T |
37640826 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg |
37640727 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
37640726 |
aaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctcac |
37640627 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
||||||||| | || ||||| || ||| || ||| ||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37640626 |
ccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaacctcaaacacctca |
37640547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37712578 - 37712299
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | || |
|
|
| T |
37712578 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtg |
37712479 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||| ||||| |
|
|
| T |
37712478 |
aaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatctttgtggaatctcac |
37712379 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
||||||||| | || ||||| || || || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37712378 |
ccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37712299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 37436661 - 37436382
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| | |||| ||||| | || |
|
|
| T |
37436661 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg |
37436562 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | ||||||| |||||| || |||| ||||| | || ||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
37436561 |
aaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatctttgtggaacctcac |
37436462 |
T |
|
| Q |
230 |
tcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
|||||||||| | || ||||| || | || || ||| |||||||| |||||||| ||||||||| | ||||||||| |
|
|
| T |
37436461 |
tcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaacccctcacacctca |
37436382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 37392209 - 37392373
Alignment:
| Q |
75 |
aactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttag |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || | ||||| | |||||||||| | || |||||| |||||||||||||||| || |||| |
|
|
| T |
37392209 |
aactggagcactcctctaaggtacttggacctatctggcatcactttctcaggtgaaattcccaaatctataggccatttgaagtatcttactcaattag |
37392308 |
T |
|
| Q |
175 |
gcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaactaaca |
239 |
Q |
| |
|
||||||| | || ||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37392309 |
tcctttcatattgcaatttagatgggatggttcctctatctttgtggaacctcactcaactaaca |
37392373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 309
Target Start/End: Complemental strand, 37703603 - 37703343
Alignment:
| Q |
49 |
accttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccatagg |
148 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| |||| ||||| |||||| ||||||| | | |||| || || | ||||||||| ||||||||||| |
|
|
| T |
37703603 |
accttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttcaggtgaaattccttattccatagg |
37703504 |
T |
|
| Q |
149 |
caatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaactaacaaagttagac |
248 |
Q |
| |
|
| ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||| ||||| ||||||||| | || ||| |
|
|
| T |
37703503 |
tcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaatctcacccaactaacatatttggac |
37703404 |
T |
|
| Q |
249 |
ctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
|| || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37703403 |
ctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37703343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 37595278 - 37595069
Alignment:
| Q |
30 |
gatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatg |
129 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| ||||| | |||| || || | || |
|
|
| T |
37595278 |
gatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcaggtg |
37595179 |
T |
|
| Q |
130 |
aaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcac |
229 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| | |||| ||||| || |||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
37595178 |
aaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgccatttagatgggatggttcctctatctttgtggaacctcac |
37595079 |
T |
|
| Q |
230 |
tcaactaaca |
239 |
Q |
| |
|
||||||||| |
|
|
| T |
37595078 |
ccaactaaca |
37595069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 37412512 - 37412600
Alignment:
| Q |
60 |
aaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccatagg |
148 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||||| | ||| ||||| | ||||||||| ||||||||||| |
|
|
| T |
37412512 |
aaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg |
37412600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 37594932 - 37594866
Alignment:
| Q |
376 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37594932 |
aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatct |
37594866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 37381583 - 37381670
Alignment:
| Q |
72 |
tccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggcaatttgaagt |
159 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| ||| | ||||| | ||||||||| |||||||||||| | ||||||| |
|
|
| T |
37381583 |
tccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcaggtgaaattccttattccataggccagttgaagt |
37381670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 37400364 - 37400430
Alignment:
| Q |
376 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37400364 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37400430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 37697395 - 37697329
Alignment:
| Q |
376 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37697395 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37697329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 37824503 - 37824437
Alignment:
| Q |
376 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37824503 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37824437 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 442
Target Start/End: Original strand, 37412657 - 37412894
Alignment:
| Q |
205 |
ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca |
304 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| | || ||||| || |||||| ||| ||||| || ||| ||||| ||||||| ||| |||| |
|
|
| T |
37412657 |
ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca |
37412756 |
T |
|
| Q |
305 |
cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat |
404 |
Q |
| |
|
|||||| ||| | ||||| | | ||| ||| | |||| |||||| | || ||||||| ||||||| |||||||| |||||| |||||| ||| |
|
|
| T |
37412757 |
tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac |
37412856 |
T |
|
| Q |
405 |
aacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
||| | | ||| ||| |||| ||||||||||| ||||| |
|
|
| T |
37412857 |
aacattacaggtcaaattccctcatcattgttccatct |
37412894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 37712223 - 37712166
Alignment:
| Q |
385 |
atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37712223 |
atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37712166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 37533690 - 37533642
Alignment:
| Q |
394 |
tttcctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37533690 |
tttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37533642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 37640458 - 37640414
Alignment:
| Q |
398 |
ctttaataacctaataggccaagttccatcatcattgtttcatct |
442 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37640458 |
ctttaacaacctaacaggccaagttccatcatcactttttcatct |
37640414 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 309
Target Start/End: Original strand, 16842078 - 16842361
Alignment:
| Q |
26 |
actagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcg |
125 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||| | ||||| ||||| |
|
|
| T |
16842078 |
actagatttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctca |
16842177 |
T |
|
| Q |
126 |
gatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacc |
225 |
Q |
| |
|
| ||||| ||||||||||||| | || |||| |||||| ||||||| ||||||| || ||||| |||| | ||||||||||||||||||||| |
|
|
| T |
16842178 |
ggagaaatctcctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacc |
16842277 |
T |
|
| Q |
226 |
tcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
309 |
Q |
| |
|
|||||||||||||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
16842278 |
tcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
16842361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 24216936 - 24217025
Alignment:
| Q |
20 |
tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctc |
109 |
Q |
| |
|
|||| ||||||||||||| | ||| | |||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216936 |
tcaaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctc |
24217025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 24217189 - 24217253
Alignment:
| Q |
273 |
gagattccaccattattttcaaacctcacacacctcactacctttggtcttggaaataataactt |
337 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||| |||| | |||| || ||||||||| |
|
|
| T |
24217189 |
gagatcccatcattactttcaaacctcacacacctcacttccttagatcttcaaattaataactt |
24217253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 14553971 - 14553783
Alignment:
| Q |
51 |
cttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccataggca |
150 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| |||||||||||| ||||| ||| |||| ||||| | ||||||||| ||||||||||| |
|
|
| T |
14553971 |
cttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctttctcaggtgaaattccttattccataggtc |
14553872 |
T |
|
| Q |
151 |
atttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctcactcaactaaca |
239 |
Q |
| |
|
| ||||||| |||||| ||||||| ||||||| | || ||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14553871 |
aattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctcactcaactaaca |
14553783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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