View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_low_48 (Length: 434)
Name: NF11278_low_48
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Complemental strand, 31688706 - 31688303
Alignment:
| Q |
14 |
agaggaatacttactaaaacagaaggtagaagaaaaatctaaggaaattggaatggaatcggcccgaaagcggaaagctgaagcttggctagaagctcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688706 |
agaggaatacttactaaaacagaaggtagaggaaaaatctaaggaaattggaatggaatcggcccgaaagcggaaagctgaagcttggctagaagctcag |
31688607 |
T |
|
| Q |
114 |
aaggaaatgacttttgcgcggaccggagaccatgctaaagtcgctgaactcgaggaagatctgaaggagatgataaggtggagtgatcttatagaagaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
31688606 |
aaggaaatgacttttgcgcggaccggagaccatgctaaagtcgctgaactcgaggaagatctgaaggag-tgataaggtggagcgatcttatagaagaag |
31688508 |
T |
|
| Q |
214 |
gacgaagaaaacgaatgaggaaagagctacggaaaaagaggcttgtctcttttgtgtctgatatgtgaaacactcttgtttcttgnnnnnnnnnnnnatt |
313 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31688507 |
gacgaaaaaaacgaatgaggaaagacctacagaaaaagaggcttgtctcttttgtgtctgatatgtgaaacactcttgtttcttgtttttcttttttatt |
31688408 |
T |
|
| Q |
314 |
atggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataacaacttttctttattggagcttctcttatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688407 |
atggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataacaacttttctttattggagcttctcttatt |
31688308 |
T |
|
| Q |
414 |
ctttt |
418 |
Q |
| |
|
||||| |
|
|
| T |
31688307 |
ctttt |
31688303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 31691699 - 31691564
Alignment:
| Q |
68 |
ggaatcggcccgaaagcggaaagctgaagcttggctagaagctcagaaggaaatgacttttgcgcggaccggagaccatgctaaagtcgctgaactcgag |
167 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||| |||||||||||| |
|
|
| T |
31691699 |
ggaattggcccgaaagcggaaagttgaagcttggctagaagctgagaaggaaatgacttttgctataaccggagactatgctgaagatgctgaactcgag |
31691600 |
T |
|
| Q |
168 |
gaagatctgaaggagatgataaggtggagtgatctt |
203 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| |
|
|
| T |
31691599 |
aaagatctgaaggagatgataaggtggggcgatctt |
31691564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 27649953 - 27649873
Alignment:
| Q |
311 |
attatggctcctgttctatagtatttgatataactatgcagttaactgtttgttaactatggtaacactataacaacttttct |
393 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||||||||||||||| | |||||| ||||||||| || |||||| |
|
|
| T |
27649953 |
attatggctactgttcta--gtatttgatataactaagcagttaactgtttgttgattatggttacactataagaaattttct |
27649873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 418
Target Start/End: Complemental strand, 36242569 - 36242539
Alignment:
| Q |
388 |
ttttctttattggagcttctcttattctttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36242569 |
ttttctttattggagcttctcttattctttt |
36242539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University