View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_49 (Length: 424)

Name: NF11278_low_49
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_49
NF11278_low_49
[»] chr3 (21 HSPs)
chr3 (215-418)||(6931085-6931289)
chr3 (23-147)||(6931327-6931450)
chr3 (306-418)||(4304141-4304254)
chr3 (306-384)||(30172069-30172148)
chr3 (309-396)||(30430271-30430359)
chr3 (307-396)||(28725678-28725770)
chr3 (315-396)||(44094309-44094391)
chr3 (310-418)||(2928096-2928205)
chr3 (306-383)||(43907899-43907976)
chr3 (309-417)||(30173598-30173707)
chr3 (307-361)||(4304350-4304404)
chr3 (311-396)||(41993143-41993229)
chr3 (309-367)||(45405097-45405155)
chr3 (306-417)||(4475249-4475361)
chr3 (311-418)||(4475108-4475215)
chr3 (307-367)||(19279899-19279959)
chr3 (311-359)||(30430672-30430720)
chr3 (307-371)||(8896059-8896124)
chr3 (297-354)||(28725267-28725324)
chr3 (307-415)||(32618934-32619043)
chr3 (333-396)||(34502627-34502691)
[»] chr5 (23 HSPs)
chr5 (310-420)||(22297905-22298016)
chr5 (307-396)||(29673290-29673379)
chr5 (309-424)||(25905959-25906075)
chr5 (306-424)||(25906097-25906215)
chr5 (310-423)||(22297764-22297878)
chr5 (306-424)||(6843080-6843199)
chr5 (307-424)||(17047994-17048111)
chr5 (306-395)||(20510463-20510553)
chr5 (308-360)||(2846573-2846625)
chr5 (309-360)||(2858411-2858462)
chr5 (306-401)||(5161065-5161159)
chr5 (311-401)||(29673700-29673791)
chr5 (307-418)||(13657694-13657806)
chr5 (307-418)||(24490693-24490804)
chr5 (306-358)||(13657547-13657599)
chr5 (312-424)||(17047859-17047972)
chr5 (307-372)||(38900222-38900287)
chr5 (306-358)||(2846957-2847008)
chr5 (306-358)||(2858794-2858845)
chr5 (333-388)||(12272527-12272583)
chr5 (309-371)||(2344507-2344569)
chr5 (308-358)||(2344670-2344720)
chr5 (307-357)||(33626007-33626057)
[»] chr2 (34 HSPs)
chr2 (311-424)||(981056-981169)
chr2 (310-421)||(16127920-16128032)
chr2 (309-424)||(980920-981034)
chr2 (306-421)||(18509495-18509611)
chr2 (308-421)||(32945612-32945725)
chr2 (308-396)||(20972389-20972478)
chr2 (310-424)||(12874819-12874934)
chr2 (311-396)||(27847860-27847946)
chr2 (301-383)||(16192593-16192676)
chr2 (319-421)||(35926736-35926838)
chr2 (307-424)||(12874679-12874797)
chr2 (307-424)||(37897574-37897692)
chr2 (306-417)||(4921309-4921421)
chr2 (308-396)||(7328465-7328553)
chr2 (333-424)||(35926863-35926955)
chr2 (307-359)||(30714122-30714173)
chr2 (310-417)||(40152701-40152808)
chr2 (310-360)||(16126222-16126272)
chr2 (307-361)||(17368873-17368927)
chr2 (297-359)||(39786305-39786367)
chr2 (312-417)||(16126366-16126471)
chr2 (310-418)||(16333294-16333403)
chr2 (308-361)||(25330560-25330613)
chr2 (306-418)||(43130288-43130400)
chr2 (312-424)||(16128057-16128169)
chr2 (310-388)||(18560500-18560577)
chr2 (307-421)||(32483645-32483760)
chr2 (306-418)||(7328331-7328444)
chr2 (351-424)||(25330693-25330767)
chr2 (333-371)||(26859208-26859246)
chr2 (307-357)||(39159300-39159350)
chr2 (312-417)||(16333154-16333259)
chr2 (309-384)||(37897731-37897807)
chr2 (331-396)||(27847999-27848065)
[»] chr7 (27 HSPs)
chr7 (306-424)||(19105394-19105512)
chr7 (308-401)||(29635235-29635328)
chr7 (306-382)||(3555363-3555440)
chr7 (308-424)||(31198437-31198553)
chr7 (310-421)||(6036550-6036662)
chr7 (308-418)||(12821179-12821289)
chr7 (311-424)||(31198302-31198415)
chr7 (306-401)||(31172337-31172433)
chr7 (306-418)||(7760742-7760855)
chr7 (306-418)||(19105254-19105366)
chr7 (310-393)||(20165011-20165095)
chr7 (310-401)||(23797206-23797298)
chr7 (307-418)||(35303853-35303965)
chr7 (309-415)||(20164620-20164727)
chr7 (310-404)||(21657458-21657553)
chr7 (308-418)||(37081240-37081349)
chr7 (307-424)||(31172175-31172292)
chr7 (306-362)||(15329855-15329911)
chr7 (309-415)||(47741005-47741112)
chr7 (306-424)||(21657295-21657414)
chr7 (309-406)||(9686442-9686540)
chr7 (308-424)||(8129879-8129995)
chr7 (308-396)||(15330014-15330103)
chr7 (308-424)||(9686292-9686410)
chr7 (301-383)||(18881105-18881190)
chr7 (307-396)||(7760607-7760697)
chr7 (306-367)||(23797062-23797121)
[»] chr8 (23 HSPs)
chr8 (308-424)||(31212313-31212430)
chr8 (306-418)||(33892034-33892147)
chr8 (310-401)||(6906435-6906527)
chr8 (308-424)||(9861568-9861685)
chr8 (306-418)||(15229614-15229727)
chr8 (306-406)||(31212441-31212542)
chr8 (306-418)||(33892181-33892294)
chr8 (306-424)||(10069998-10070117)
chr8 (306-383)||(14148394-14148472)
chr8 (303-418)||(6906259-6906374)
chr8 (306-393)||(8791877-8791965)
chr8 (310-396)||(7765953-7766039)
chr8 (307-415)||(29242820-29242928)
chr8 (333-424)||(8791735-8791827)
chr8 (307-367)||(20691273-20691332)
chr8 (334-421)||(36874336-36874424)
chr8 (309-396)||(39484723-39484810)
chr8 (306-361)||(37037306-37037360)
chr8 (311-384)||(14148864-14148937)
chr8 (306-415)||(29242430-29242539)
chr8 (306-359)||(5879873-5879926)
chr8 (309-358)||(27503696-27503745)
chr8 (313-376)||(31943181-31943244)
[»] chr6 (16 HSPs)
chr6 (306-424)||(13340582-13340701)
chr6 (306-384)||(6190567-6190645)
chr6 (306-418)||(34637569-34637682)
chr6 (306-423)||(31298864-31298982)
chr6 (308-424)||(34637425-34637541)
chr6 (310-361)||(13340445-13340496)
chr6 (306-396)||(31298722-31298813)
chr6 (307-390)||(12289979-12290063)
chr6 (303-418)||(30519676-30519791)
chr6 (309-389)||(7359593-7359674)
chr6 (306-358)||(12290175-12290226)
chr6 (311-394)||(14365097-14365180)
chr6 (309-396)||(24704308-24704396)
chr6 (306-387)||(403305-403386)
chr6 (336-396)||(19045057-19045118)
chr6 (308-367)||(10284399-10284459)
[»] chr4 (18 HSPs)
chr4 (306-424)||(54164605-54164724)
chr4 (310-382)||(53343707-53343780)
chr4 (307-421)||(54164465-54164580)
chr4 (307-418)||(34665123-34665235)
chr4 (308-387)||(17430713-17430793)
chr4 (310-418)||(32185283-32185390)
chr4 (308-415)||(32186616-32186722)
chr4 (333-396)||(34665005-34665069)
chr4 (306-384)||(33752712-33752791)
chr4 (309-406)||(13552819-13552917)
chr4 (316-401)||(17431122-17431208)
chr4 (307-419)||(7513526-7513639)
chr4 (306-418)||(28687459-28687572)
chr4 (309-384)||(17250463-17250539)
chr4 (308-424)||(13552669-13552787)
chr4 (308-401)||(28687623-28687716)
chr4 (335-388)||(17168810-17168864)
chr4 (335-388)||(17174382-17174436)
[»] chr1 (24 HSPs)
chr1 (306-418)||(14760019-14760131)
chr1 (310-395)||(22679494-22679580)
chr1 (305-424)||(16706474-16706597)
chr1 (311-418)||(15393300-15393407)
chr1 (313-418)||(13765561-13765667)
chr1 (308-383)||(30746773-30746849)
chr1 (308-383)||(30768224-30768300)
chr1 (308-418)||(30748951-30749062)
chr1 (308-418)||(30770402-30770513)
chr1 (314-391)||(20171395-20171472)
chr1 (306-422)||(16706333-16706450)
chr1 (307-419)||(35294332-35294445)
chr1 (306-361)||(14759951-14760005)
chr1 (307-416)||(32800271-32800381)
chr1 (310-367)||(51900116-51900173)
chr1 (306-401)||(30749102-30749198)
chr1 (306-401)||(30770553-30770649)
chr1 (309-396)||(39255453-39255539)
chr1 (308-389)||(15393145-15393227)
chr1 (301-367)||(22679330-22679396)
chr1 (306-372)||(35215031-35215097)
chr1 (306-386)||(30746938-30747018)
chr1 (306-386)||(30768389-30768469)
chr1 (306-355)||(39785218-39785267)
[»] scaffold0025 (1 HSPs)
scaffold0025 (307-424)||(63964-64082)
[»] scaffold0328 (1 HSPs)
scaffold0328 (308-392)||(11623-11708)
[»] scaffold0042 (1 HSPs)
scaffold0042 (307-359)||(30310-30362)
[»] scaffold0129 (1 HSPs)
scaffold0129 (309-354)||(6273-6317)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 215 - 418
Target Start/End: Complemental strand, 6931289 - 6931085
Alignment:
Q  215 ttgttacagttggtgaacttcaaggcattggagtccagctcccaatcactaatattggagatatagattagtcattaggagttattatttgtagggttaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6931289 ttgttacagttggtgaacttcaaggcattggagtccagctcccaatcactaatattgaagatatagattagtcattaggagttattatttgtagggttaa 6931190  T
Q  315 ataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaatttttgaaat 413  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||| |||||||| |||| |||||||||||    
T  6931189 ataagtaaatagtcctcttaaatatactaacatttgattttagtccctttaaaacatttcttaggtttttgatctctctaaaatttttcatttttgaaat 6931090  T
Q  414 tagtc 418  Q
    |||||    
T  6931089 tagtc 6931085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 6931450 - 6931327
Alignment:
Q  23 ttcatcatatctttgtaaattgttcacgttatgtgttaccatttgcttatatatgcagcaactttctatatctgattaaatctaaatttaattttacaga 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6931450 ttcatcatttctttgtaaattgttcacgttatgtgttaccatttgcttatatatgtagcaactttctatatctgattaaatataaatttaattttacaga 6931351  T
Q  123 cttaacagttaaaatgctactaaaa 147  Q
    ||| |||||||||||||||||||||    
T  6931350 ctt-acagttaaaatgctactaaaa 6931327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 4304141 - 4304254
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||| ||| ||||||| |||  ||    
T  4304141 tagggttaaataaataaatcgtccccttaaatataccaacatttgattttagtcctcctaaaatatttcttaagcttttggtccttctaaaattttacat 4304240  T
Q  405 ttttgaaattagtc 418  Q
     | |||||||||||    
T  4304241 atatgaaattagtc 4304254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 30172069 - 30172148
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttg 384  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||  |||||||||||    
T  30172069 tagggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatattctttaggtttttg 30172148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 30430271 - 30430359
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| ||| || |||||||  ||||| ||||| |||||||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgattttagttcctctaaaatattctttaggcttttggtccctctaaaa 30430359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 28725770 - 28725678
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatata---ccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||||||||||| ||  |||||||  ||||||||||| |||||| ||||    
T  28725770 agggttaaataagtaaatggtccccctaaatataataccaacatttgattttagtctcccaaaatattcattaggtttttggtccctccaaaa 28725678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 44094391 - 44094309
Alignment:
Q  315 ataagtaaatggtccccttaaatataccaacatttgattttagtcccct-taaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| |||  |||||||||||||| ||||| |||||| ||||    
T  44094391 ataagcaaatggtccccttaaatatatcaacatttgattttagtctcctgaaaatatttcttagggttttggtccctccaaaa 44094309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 2928096 - 2928205
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    |||||||||||||||||||| | ||||||||||||||||||||| ||||||| || |||| || |||||| ||||| |||||| |||| |||  |||  |    
T  2928096 gttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccctctaaaattttccttaggcttttggtccctccaaaattttccattcat 2928195  T
Q  409 gaaattagtc 418  Q
    ||||||||||    
T  2928196 gaaattagtc 2928205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 43907976 - 43907899
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggttttt 383  Q
    |||||||||||||||||||| |||| |||||||||| || ||||||||||||| ||||| |||||||| ||||||||||    
T  43907976 tagggttaaataagtaaatgatccc-ttaaatatactaatatttgattttagtccccctaaaatattttttaggttttt 43907899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 30173707 - 30173598
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttc-ttaggtttttgatccctctaaaacttttaatttt 407  Q
    ||||||||||| |||| ||  || |||||||||||| ||||||||||||||||| ||||  |||| ||||| ||||||||||||||||| |||  || |     
T  30173707 ggttaaataagaaaatagtttccctaaatataccaatatttgattttagtccccctaaaattttctttaggcttttgatccctctaaaattttatatcta 30173608  T
Q  408 tgaaattagt 417  Q
    ||||||||||    
T  30173607 tgaaattagt 30173598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 4304404 - 4304350
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc 361  Q
    ||||||||||||||||||  || || |||||||||||||||||||||||||||||    
T  4304404 agggttaaataagtaaataatctccctaaatataccaacatttgattttagtccc 4304350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 41993229 - 41993143
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||| | || | ||||||||| ||| ||||||||||| || |||| |||||||| ||||| |||||||||||||||||    
T  41993229 ttaaataagtaaacgatcacattaaatatatcaatatttgattttaatctccctaaaatattttttaggcttttgatccctctaaaa 41993143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 45405155 - 45405097
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    |||||||||||| ||  |||||||||||||||| |||||||||||||||||||| ||||    
T  45405155 ggttaaataagttaactgtccccttaaatatactaacatttgattttagtccccctaaa 45405097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 417
Target Start/End: Complemental strand, 4475361 - 4475249
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttctt-aggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||| || |||| || | | |||||||| ||||||||||||||| || | |||||  |||||| ||||||||||||| ||||||| |||| ||    
T  4475361 tagggttaaattagaaaatagtgctcctaaatatatcaacatttgattttaatcactttaaaattttctttaggtttttgatccttctaaaattttttat 4475262  T
Q  405 ttttgaaattagt 417  Q
     | ||||||||||    
T  4475261 ctatgaaattagt 4475249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 418
Target Start/End: Original strand, 4475108 - 4475215
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgatttt-agtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttttg 409  Q
    |||||||||||||  |||| | ||||||||||||||||||||||| | |||||| |||||||  ||||| |||| || ||| ||||| |||| || | ||    
T  4475108 ttaaataagtaaaaagtcctcctaaatataccaacatttgattttaattcccctaaaatattctttagggttttaat-cctttaaaaattttcatctatg 4475206  T
Q  410 aaattagtc 418  Q
    |||||||||    
T  4475207 aaattagtc 4475215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 19279899 - 19279959
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    |||||||||||||||| | || ||| ||| |||||||||||||||||||||  ||||||||    
T  19279899 agggttaaataagtaagtagttcccctaagtataccaacatttgattttagatcccttaaa 19279959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 30430720 - 30430672
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtc 359  Q
    ||||||||||||||||||||| |||||||| ||| |||| |||||||||    
T  30430720 ttaaataagtaaatggtccccctaaatatatcaatatttaattttagtc 30430672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 8896124 - 8896059
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatt 371  Q
    |||||||||||||||| || ||  |||||||| |||||||||| ||||||||| |||| |||||||    
T  8896124 agggttaaataagtaagtgatcatcttaaatacaccaacatttaattttagtctccctaaaatatt 8896059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 28725267 - 28725324
Alignment:
Q  297 tattatttgtagggttaaataagtaaatggtccccttaaatataccaacatttgattt 354  Q
    |||| ||| ||| ||||||||||||||| ||| || ||||||||||||||||| ||||    
T  28725267 tattgtttctagagttaaataagtaaatagtcaccataaatataccaacatttaattt 28725324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 415
Target Start/End: Complemental strand, 32619043 - 32618934
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||| || |   |||||||| ||||||||||||||||||   || |||||||| |||| |||||  | ||||||||| |||| |||    
T  32619043 agggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaaaatttttcatt 32618944  T
Q  406 tttgaaatta 415  Q
    | | ||||||    
T  32618943 tataaaatta 32618934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 34502627 - 34502691
Alignment:
Q  333 taaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaa 396  Q
    |||||||| ||||||||||||||||||||  | |||||||| ||||| ||||  |||||||||||    
T  34502627 taaatatatcaacatttgattttagtccctataaaatattttttaggcttttcgtccctctaaaa 34502691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 22298016 - 22297905
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||| |||| |||| |    
T  22298016 gttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaaaatttttcatttat 22297917  T
Q  409 gaaattagtctc 420  Q
    ||||||||||||    
T  22297916 gaaattagtctc 22297905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 29673290 - 29673379
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||| |||||||||||    
T  29673290 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatattt-ttaggattttgttccctctaaaa 29673379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 424
Target Start/End: Original strand, 25905959 - 25906075
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaatttt 407  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||| |||| || |     
T  25905959 ggttaaataagtaaatgatccccttatatataccaacatttgattttagtccccctaaagtatttcataggcttttggtccctctaaaatttttcatcta 25906058  T
Q  408 tgaaattagtctctgct 424  Q
    | ||||||||| |||||    
T  25906059 taaaattagtccctgct 25906075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 25906215 - 25906097
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||||||||||||||||||  ||| | |||||||| ||||||||||||||||| |||||||||||||  ||||| ||||| ||||||| ||| |||| ||    
T  25906215 tagggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccctct-aaatttttcat 25906117  T
Q  405 ttttgaaattagtctctgct 424  Q
    || |||||||||||||||||    
T  25906116 ttatgaaattagtctctgct 25906097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 423
Target Start/End: Original strand, 22297764 - 22297878
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    ||||||||||||||| |||||  |||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| || | || | |    
T  22297764 gttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaatttctcatctat 22297863  T
Q  409 gaaattagtctctgc 423  Q
    |||||||||| ||||    
T  22297864 gaaattagtccctgc 22297878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 424
Target Start/End: Original strand, 6843080 - 6843199
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| |||  |||||| ||||| |||||| ||||||||||| |||| ||    
T  6843080 tagggttaaataaataaatagtctctttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttttcat 6843179  T
Q  405 ttttgaaattagtctctgct 424  Q
     | |||||||| || |||||    
T  6843180 ctatgaaattaatccctgct 6843199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 424
Target Start/End: Complemental strand, 17048111 - 17047994
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||| ||||| | |||||||||  ||| ||     
T  17048111 agggttaaataagtgaatgatccccttaaatataccaacatttga-tttagtccccctaaaagattttttaggcttttggttcctctaaaaaatttcatc 17048013  T
Q  406 tttgaaattagtctctgct 424  Q
    | | |||||||||||||||    
T  17048012 tattaaattagtctctgct 17047994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 20510553 - 20510463
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaa 395  Q
    |||||||||| |||||||| |||| | ||||||||  ||||||||||||||||||| || |||||||| ||||| ||||||||||||||||    
T  20510553 tagggttaaaaaagtaaatagtcctcataaatatataaacatttgattttagtcccattaaaatattttttaggcttttgatccctctaaa 20510463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 2846573 - 2846625
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc 360  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2846573 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcc 2846625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 2858411 - 2858462
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc 360  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2858411 ggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcc 2858462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 5161159 - 5161065
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||||||||||||||| |   ||||||||||  |||||||||||||| |||||| |||||||  ||||||||||||| ||||||||| ||||    
T  5161159 tagggttaaataagtaaatgattttcttaaatatattaacatttgattttactcccctaaaatattatttaggtttttgat-cctctaaaaatttt 5161065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 29673791 - 29673700
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||| ||| || |||||||||||| | ||||| |||||| |||| ||||    
T  29673791 ttaaataagtaaatggttcccctaaatatacaaacatttgattttagttcctctaaaatatttcttaaggttttggtccctccaaaaatttt 29673700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 13657806 - 13657694
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||| |||| || |||||||| ||||||||||||||| |  ||| |||||||  || || ||||| ||||||||||| |||| ||     
T  13657806 agggttaaataagtaaatagtcctctgaaatatactaacatttgattttagttttcctaaaatattattttggcttttgttccctctaaaaattttcatg 13657707  T
Q  406 tttgaaattagtc 418  Q
    | |||||||||||    
T  13657706 tatgaaattagtc 13657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 418
Target Start/End: Original strand, 24490693 - 24490804
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||||||||| | || |||||| ||||| ||||||| |||||| |||| || | ||     
T  24490693 agggttaaataagtaaatggtccttctaa-tataccaacatttgattttagtctctctaaaatatctcttaagtttttggtccctccaaaatttctcatc 24490791  T
Q  406 tttgaaattagtc 418  Q
    | |||||||||||    
T  24490792 tatgaaattagtc 24490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 13657547 - 13657599
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt 358  Q
    |||| |||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  13657547 taggattaaataaataaatggtccctttaaatatacaaacatttgattttagt 13657599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 17047859 - 17047972
Alignment:
Q  312 taaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaatttttga 410  Q
    |||||| |||||| ||| |  |||||||||||| |||||||||||| || ||| |||||||  |||   ||||| ||||||||||| |||| |||| |||    
T  17047859 taaatatgtaaatagtctctctaaatataccaatatttgattttagccctcctaaaatattctttaaacttttggtccctctaaaatttttcatttatga 17047958  T
Q  411 aattagtctctgct 424  Q
    | ||||||||||||    
T  17047959 agttagtctctgct 17047972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 38900222 - 38900287
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatattt 372  Q
    ||||||||||||||||||  ||||  |||||||||||| |||| ||||||||| ||| ||||||||    
T  38900222 agggttaaataagtaaattttccctctaaatataccaatattttattttagtctcctaaaatattt 38900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 2847008 - 2846957
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt 358  Q
    ||||||||||||||||||||||| || || ||| |||||||||||||||||||    
T  2847008 tagggttaaataagtaaatggtctcc-tatataaaccaacatttgattttagt 2846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 2858845 - 2858794
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt 358  Q
    ||||||||||||||||||||||| || || ||| |||||||||||||||||||    
T  2858845 tagggttaaataagtaaatggtctcc-tatataaaccaacatttgattttagt 2858794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 12272527 - 12272583
Alignment:
Q  333 taaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatcc 388  Q
    ||||||||||||||||||||||||||| | || ||||| || |||||||||||||||    
T  12272527 taaatataccaacatttgattttagtctctctaaaataatttttaggtttttgatcc 12272583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 2344507 - 2344569
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatt 371  Q
    |||||||||||||||  |||||| | |||||| || ||||||||||||||||| | |||||||    
T  2344507 ggttaaataagtaaacagtcccccttaatatatcatcatttgattttagtcccttaaaatatt 2344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 2344720 - 2344670
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagt 358  Q
    ||||||||||||||||| |||| | |||||| |||||||||| ||||||||    
T  2344720 gggttaaataagtaaatagtcctcctaaatagaccaacattttattttagt 2344670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 33626057 - 33626007
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttag 357  Q
    ||||||||||||||||||| ||| | |||||||| ||| ||||||||||||    
T  33626057 agggttaaataagtaaatgatcctcctaaatatatcaatatttgattttag 33626007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 311 - 424
Target Start/End: Complemental strand, 981169 - 981056
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttttga 410  Q
    |||||||||||||| ||| |  ||||||||||||||||||||||||||||||| |||||||  ||||| ||||| ||||||||||| |||| |||| |||    
T  981169 ttaaataagtaaatagtctctctaaatataccaacatttgattttagtcccctaaaatattctttaggcttttggtccctctaaaatttttcatttatga 981070  T
Q  411 aattagtctctgct 424  Q
    ||||||||||||||    
T  981069 aattagtctctgct 981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 16127920 - 16128032
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||   |||||||||| ||||||||||| |||| |||| |    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaatttttcatttat 16128019  T
Q  409 gaaattagtctct 421  Q
    |||||||||||||    
T  16128020 gaaattagtctct 16128032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 424
Target Start/End: Original strand, 980920 - 981034
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||||| || |||||||||||||| ||||| |||| ||||||  ||| || | |    
T  980920 ggttaaataagtaaatgatccctttaaatatatcaacatttgattttagtcctctaaaatatttcttaggcttttggtccc-ctaaaaaattttatctat 981018  T
Q  409 gaaattagtctctgct 424  Q
    ||||||||||||||||    
T  981019 gaaattagtctctgct 981034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 421
Target Start/End: Original strand, 18509495 - 18509611
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| |||||||| |||||| |||| |||  ||    
T  18509495 tagggttaaataattaaatggtccccctaaatataccaacatttgattttagtccctctaaaatattcctttggtttttggtccctccaaaattttccat 18509594  T
Q  405 ttttgaaattagtctct 421  Q
     | | ||||||||||||    
T  18509595 ctgtaaaattagtctct 18509611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 421
Target Start/End: Original strand, 32945612 - 32945725
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||| |||||| ||||||  ||||||||||||||||||||||||||||| | |||||||  |||| |||||||||||||||||| |||| ||||    
T  32945612 gggttaaataggtaaatagtcccccaaaatataccaacatttgattttagtccccataaaatattatttagatttttgatccctctaaaa-tttttattt 32945710  T
Q  407 ttgaaattagtctct 421  Q
     |||||||| |||||    
T  32945711 atgaaattaatctct 32945725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 20972478 - 20972389
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||   |||||||||||||||||||| |||| ||||||    
T  20972478 gggttaaataagtgaatggtccctttaaatatatcaacatttgattttagtccccaaaaaatatttcttaggtttttggtcccgctaaaa 20972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 424
Target Start/End: Complemental strand, 12874934 - 12874819
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    ||||||||||||||| |||  |  ||||||||||| |||||||||||||||| || |||||||  ||||||||||| ||||||||||| |||| |||| |    
T  12874934 gttaaataagtaaatagtcttcccaaatataccaatatttgattttagtccctctaaaatattatttaggtttttggtccctctaaaagttttcatttat 12874835  T
Q  409 gaaattagtctctgct 424  Q
    |||||||||| |||||    
T  12874834 gaaattagtccctgct 12874819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 27847860 - 27847946
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaa 396  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| ||||||| ||||| |||||    
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattccttaagtttttggtccctttaaaa 27847946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 16192676 - 16192593
Alignment:
Q  301 atttgtagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggttttt 383  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||| ||||||| |||||| ||||    
T  16192676 atttctagggttaaataagtaaatagtcctcttaaatatatcaacatttgattttagtctccctaaaatattccttaggctttt 16192593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 421
Target Start/End: Original strand, 35926736 - 35926838
Alignment:
Q  319 gtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaatttttgaaattagt 417  Q
    |||||| ||||||| |||||||||||||||||||||||||| || |||| ||||| ||||||||||  | |||||||||| ||| |||| ||||||||||    
T  35926736 gtaaatagtcccct-aaatataccaacatttgattttagtctccataaaatattttttaggtttttagttcctctaaaacatttcatttatgaaattagt 35926834  T
Q  418 ctct 421  Q
    ||||    
T  35926835 ctct 35926838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 424
Target Start/End: Original strand, 12874679 - 12874797
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||| ||||| || ||||||  |||||  ||||| || ||||||||  ||| ||     
T  12874679 agggttaaataagtaaatggtttccctaaatataccaacatttgattttggtccctttaaaatatcccttagacttttggtctctctaaaaaatttcatc 12874778  T
Q  406 tttgaaattagtctctgct 424  Q
    | |||||||||||||||||    
T  12874779 tatgaaattagtctctgct 12874797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 424
Target Start/End: Original strand, 37897574 - 37897692
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    ||||||||||||| |||| | || | |||||| ||||||||||||||||| |||| || ||||||| |||||||||| | ||||||||||| |||| ||     
T  37897574 agggttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaaaaattttcatc 37897673  T
Q  406 tttgaaattagtctctgct 424  Q
      |||||||||||||||||    
T  37897674 catgaaattagtctctgct 37897692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 417
Target Start/End: Complemental strand, 4921421 - 4921309
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||| ||||| ||| |  |||||||| ||||||||||||||| ||||||| |||||||| |||| |||||  ||||||||||| |||| ||    
T  4921421 tagggttaaataaataaatagtctctctaaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaaaaattttcat 4921322  T
Q  405 ttttgaaattagt 417  Q
     | ||||||||||    
T  4921321 ctatgaaattagt 4921309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 7328553 - 7328465
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||||||| ||| || ||||||||| ||||||||| ||||||||| | |||||||  ||||||| ||| |||||||||||    
T  7328553 gggttaaataagtaaatagtctccctaaatatactaacatttgactttagtcccataaaatattctttaggttattggtccctctaaaa 7328465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 35926955 - 35926863
Alignment:
Q  333 taaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaatttttgaaattagtctctgct 424  Q
    ||||||||||||||||||||||||||| |  |||| ||||| |||||||||||||  |||||||| |||| |||| |||||||||||| ||||    
T  35926955 taaatataccaacatttgattttagtctcaataaaatattttttaggtttttgatttctctaaaattttttatttatgaaattagtctttgct 35926863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 30714122 - 30714173
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc 359  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30714122 agggttaaata-gtaaatggtccccttaaatatatcaacatttgattttagtc 30714173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 40152701 - 40152808
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    |||||||||||||||||| || |||||||||| ||||||| |||||||||| ||| ||||||| ||||| |||||  |||||| |||| |||| || | |    
T  40152701 gttaaataagtaaatggt-cctttaaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctccaaaatttttcatctat 40152799  T
Q  409 gaaattagt 417  Q
    |||||||||    
T  40152800 gaaattagt 40152808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 16126222 - 16126272
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc 360  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  16126222 gttaaataagtaaacagtccccttaaatataccaacatttaattttagtcc 16126272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 17368927 - 17368873
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc 361  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  17368927 agggctaaataagtatatggtctccttaaatataccaacatttgattttggtccc 17368873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 39786305 - 39786367
Alignment:
Q  297 tattatttgtagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc 359  Q
    |||| ||| |||||||||||||||||||  |||  ||||||||||||||||||||||||||||    
T  39786305 tattttttttagggttaaataagtaaataatcctattaaatataccaacatttgattttagtc 39786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 16126471 - 16126366
Alignment:
Q  312 taaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttttgaa 411  Q
    |||||||||||||| ||| | |||||||||||| ||||||||||| || ||| |||||||  |||||||| || | | ||||| | |||| |||| ||||    
T  16126471 taaataagtaaatgatcctcataaatataccaaaatttgattttaatcgcctaaaatattctttaggtttctggttcttctaacatttttcatttatgaa 16126372  T
Q  412 attagt 417  Q
    ||||||    
T  16126371 attagt 16126366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 16333403 - 16333294
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||| ||| ||| || ||||   || ||||||  ||||||||||  |||| |||| |    
T  16333403 gttaaataagtaaacagtccccttaaatataccaacatttaattttaatcctcctaaattattatgtacgttttttgtccctctaaattttttcatttat 16333304  T
Q  409 gaaattagtc 418  Q
    ||||||||||    
T  16333303 gaaattagtc 16333294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 25330560 - 25330613
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc 361  Q
    ||||||||||||||||| |||||| |||||| | ||||||||||||||||||||    
T  25330560 gggttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccc 25330613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 43130400 - 43130288
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| |||||| |  |||| || |||||| ||||| |||||| |||| |||  ||    
T  43130400 tagggttaaataagtaaatggtctccctaaatatacc-acatttgatttcagtccctccaaaattttccttaggcttttggtccctccaaaattttccat 43130302  T
Q  405 ttttgaaattagtc 418  Q
    |  |||||||||||    
T  43130301 tcatgaaattagtc 43130288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 16128169 - 16128057
Alignment:
Q  312 taaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttttgaa 411  Q
    |||||||||||||| ||| | | |||||||||| ||||||||||| |||  | |||||||  |||||||| || | | ||||| | |||| |||| ||||    
T  16128169 taaataagtaaatgatcctcgtgaatataccaaaatttgattttaatcctttaaaatattctttaggtttctggttcttctaacatttttcatttatgaa 16128070  T
Q  412 attagtctctgct 424  Q
    |||||||||||||    
T  16128069 attagtctctgct 16128057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 18560500 - 18560577
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatcc 388  Q
    ||||||||| |||||||||||  |||||||| |||||||||||||||||| |||| ||||||| |||||  |||||||||    
T  18560500 gttaaataaataaatggtccc--taaatatatcaacatttgattttagtctccttaaaatattccttagacttttgatcc 18560577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 32483645 - 32483760
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgatttt-agtccccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    ||||||||||||||||||  | || ||||||||||  |||||||||||| | |||| | |||||||| ||||| ||||| |  |||||||| |||| |||    
T  32483645 agggttaaataagtaaataattcctttaaatatactgacatttgattttaattcccataaaatattttttaggcttttggtttctctaaaaattttcatt 32483744  T
Q  406 tttgaaattagtctct 421  Q
    | |||||| |||||||    
T  32483745 tatgaaatcagtctct 32483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 7328331 - 7328444
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttct-taggtttttgatccctctaaaacttttaa 403  Q
    |||||||||||||||||| | |||  | |||||||||| |||||||||| |||||| |  |||||||| | |||||||||  ||||||||||| |||| |    
T  7328331 tagggttaaataagtaaacgatcctat-aaatataccatcatttgatttcagtccctccaaaatatttttgtaggtttttagtccctctaaaatttttca 7328429  T
Q  404 tttttgaaattagtc 418  Q
    ||| |||||||||||    
T  7328430 tttatgaaattagtc 7328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 25330767 - 25330693
Alignment:
Q  351 attttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaatttttgaaattagtctctgct 424  Q
    ||||||||||| ||||| ||||| ||||||||||| ||| ||||||| |||| |||| ||||||||||| |||||    
T  25330767 attttagtccctttaaaatattttttaggtttttggtccttctaaaaattttcatttatgaaattagtccctgct 25330693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 26859208 - 26859246
Alignment:
Q  333 taaatataccaacatttgattttagtccccttaaatatt 371  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  26859208 taaatataccaacatttgattttagtcccctaaaatatt 26859246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 39159350 - 39159300
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttag 357  Q
    |||||||||||||| ||| |||| ||||||||||| |||||||||||||||    
T  39159350 agggttaaataagttaatagtcctcttaaatatactaacatttgattttag 39159300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 16333154 - 16333259
Alignment:
Q  312 taaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttttgaa 411  Q
    |||||||||||||| ||| | |||||||| ||| ||||||||||| || ||| |||||||  |||||||| || | | ||||| | |||| |||| ||||    
T  16333154 taaataagtaaatgatcctcataaatatatcaaaatttgattttaatcgcctaaaatattctttaggtttctggttcttctaacatttttcatttatgaa 16333253  T
Q  412 attagt 417  Q
    ||||||    
T  16333254 attagt 16333259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 37897807 - 37897731
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttg 384  Q
    |||||||||||||||  ||| |  |||||||||||||||||  ||||||||| ||| |||||||||||||| |||||    
T  37897807 ggttaaataagtaaaaagtctcactaaatataccaacattttgttttagtcctcctaaaatatttcttaggcttttg 37897731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 27848065 - 27847999
Alignment:
Q  331 cttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||||||||||||||||||| | || ||||||| |||| | ||||| |||||| ||||    
T  27848065 cttaaatataccaacatttgattttagtctctttaaaatattacttaagcttttggtccctccaaaa 27847999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 19105512 - 19105394
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||    
T  19105512 tagggttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccctctaaaa-ttttcat 19105414  T
Q  405 ttttgaaattagtctctgct 424  Q
    || |||||||||||| ||||    
T  19105413 ttatgaaattagtctatgct 19105394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 29635235 - 29635328
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||  ||||| ||||||||||| ||||    
T  29635235 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcccctaaaatattccttagacttttggtccctctaaaattttt 29635328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 3555363 - 3555440
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttt 382  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  3555363 tagggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttcttaggtttt 3555440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 424
Target Start/End: Complemental strand, 31198553 - 31198437
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||| |||||||||||||| |||||  |||||||||| |||| || |    
T  31198553 gggttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatatttcttaggcttttg-gccctctaaaatttttcatct 31198455  T
Q  407 ttgaaattagtctctgct 424  Q
     ||||||||||| |||||    
T  31198454 atgaaattagtccctgct 31198437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 6036550 - 6036662
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaattttt 408  Q
    ||||||||||||||| || ||| |||||||| ||||||||||||||||||||||| ||||| || |||||||||||  | |||||||| |||| |||| |    
T  6036550 gttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggtttttggcctctctaaaatttttcatttat 6036649  T
Q  409 gaaattagtctct 421  Q
    |||||||||||||    
T  6036650 gaaattagtctct 6036662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 12821179 - 12821289
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||| ||||| ||||| | ||||||||| |||| || |    
T  12821179 gggttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatattttttaggcttttggttcctctaaaa-ttttcatct 12821277  T
Q  407 ttgaaattagtc 418  Q
     |||||||||||    
T  12821278 atgaaattagtc 12821289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 424
Target Start/End: Original strand, 31198302 - 31198415
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaatttttg 409  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||||  || |||||||| ||||||| ||||||||||||||| |||| |||| ||    
T  31198302 ttaaataagtaaatagttccct-aaatataccaacatttgattttagtccttctaaaatattttttaggttattgatccctctaaaatttttcatttatg 31198400  T
Q  410 aaattagtctctgct 424  Q
    |||||| || |||||    
T  31198401 aaattaatccctgct 31198415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 31172433 - 31172337
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||| ||||||||||||||| |||| |||||||||| |||||||||||||| ||| ||| |||||||| ||||||||||| ||||||||||| ||||    
T  31172433 taggattaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaatttt 31172337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 7760855 - 7760742
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||| |||||||||||||| || ||| |||||||||||||||||||||||||||||  | |||||||||||||| ||||| |||||| |||| |||| ||    
T  7760855 taggattaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcat 7760756  T
Q  405 ttttgaaattagtc 418  Q
       |||||||||||    
T  7760755 ccatgaaattagtc 7760742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 19105254 - 19105366
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||| | ||| | ||||||||| |||||| ||||||||||| || |||||||  ||||| ||||| |||||||| || |||| |||    
T  19105254 tagggttaaataagtaaaagatccgcataaatatactaacattcgattttagtcctctaaaatattctttaggcttttggtccctctataatttttcatt 19105353  T
Q  406 tttgaaattagtc 418  Q
    | |||||||||||    
T  19105354 tatgaaattagtc 19105366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 20165095 - 20165011
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctcta 393  Q
    |||||||||| ||||||||  | ||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||||||    
T  20165095 gttaaataaggaaatggtcttcctaaatataccaacatttgattttagtccctctaaaatattcattaggtttttgatccctcta 20165011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 23797298 - 23797206
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||| |||||| ||  || |||||||| |||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||    
T  23797298 gttaaatatgtaaatagtttccctaaatatatcaacatttgattttagtccctctaaaatatttcttagatttttggtccctctaaaactttt 23797206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 418
Target Start/End: Original strand, 35303853 - 35303965
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||| || |||||||||  ||||||| ||| |||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||| |||     
T  35303853 agggttaaataattacatggtcccccgaaatatatcaatatttaattttagttccccttaaatatttttgaggtttttggtccctctaaaactttcaatc 35303952  T
Q  406 tttgaaattagtc 418  Q
      |||||||||||    
T  35303953 catgaaattagtc 35303965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 415
Target Start/End: Original strand, 20164620 - 20164727
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaatttt 407  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||   || |||| || |||| ||||||| |||||| |||| |||| |||      
T  20164620 ggttaaataagtaaatggtcccctaaaatataccaacatttgattttagtcattttaaaattttccttaagtttttggtccctccaaaatttttcattca 20164719  T
Q  408 tgaaatta 415  Q
    ||||||||    
T  20164720 tgaaatta 20164727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 404
Target Start/End: Complemental strand, 21657553 - 21657458
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||| ||| || ||||||||| |||||||||| |||| |||||| ||||||| |||| | ||||||||||||||||| |||||||    
T  21657553 gttaaataagtaaatagtctccctaaatatactaacatttgatattagcccccttaaaatattccttacgcttttgatccctctaaaatttttaat 21657458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 37081349 - 37081240
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||||  |||||| ||||||| |||| ||||||||||||||||  ||| |||| |||||||||||| ||||||||||| |||| ||||    
T  37081349 gggttaaataagtaaatattcccct-aaatatatcaacgtttgattttagtcccccaaaaatattccttaggtttttggtccctctaaaa-ttttcattt 37081252  T
Q  407 ttgaaattagtc 418  Q
     |||||||||||    
T  37081251 atgaaattagtc 37081240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 424
Target Start/End: Original strand, 31172175 - 31172292
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||| ||||| | | | | ||||||| ||||||||||||||| |||  | |||||||| ||||  ||||||||||||||||  |||| ||||    
T  31172175 agggttaaataaataaatagcctcttcaaatatatcaacatttgattttactcctataaaatattttttagacttttgatccctctaaagtttttcattt 31172274  T
Q  407 ttgaaattagtctctgct 424  Q
     |||||||||||||||||    
T  31172275 atgaaattagtctctgct 31172292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 15329855 - 15329911
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc 362  Q
    |||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  15329855 tagggttaaatatggaaatagtccccttaaatataccaacatttgattttagtcccc 15329911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 47741112 - 47741005
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaatttt 407  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||| ||| ||||  |||||||||||||| ||||| ||| || ||||  |||||||      
T  47741112 ggttaattaagtaaatggtccccataaatataccaacatttaatttcagtcccccaaaaatatttcttaggcttttgctccttccaaaaaatttaattca 47741013  T
Q  408 tgaaatta 415  Q
    ||||||||    
T  47741012 tgaaatta 47741005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 424
Target Start/End: Original strand, 21657295 - 21657414
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||||||||||||||||||||||| | |||||||| |||||||| | ||||| |||| | |||||||  ||||  ||||| | | || |||| |||| ||    
T  21657295 tagggttaaataagtaaatggtcctcctaaatatatcaacatttaactttagctcccttaaaatattctttagacttttggttcttcaaaaaattttcat 21657394  T
Q  405 ttttgaaattagtctctgct 424  Q
    || |||||||||||||||||    
T  21657395 ttatgaaattagtctctgct 21657414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 9686540 - 9686442
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||| |||| | |||||||| ||| ||||||||||||||||| | |||||||  ||||| ||||| ||| ||||||| |||| ||||    
T  9686540 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcattt 9686442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 424
Target Start/End: Original strand, 8129879 - 8129995
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||||| || ||| |||| |||||||||||||||||| |||  || ||||||||||| |  ||||| | |||||||||  ||| ||||    
T  8129879 gggttaaataagtaaatgatctcct-aaatctaccaacatttgattttaatccttttaaaatatttctttgacttttggttcctctaaaatctttcattt 8129977  T
Q  407 ttgaaattagtctctgct 424  Q
     ||||||| |||||||||    
T  8129978 atgaaattcgtctctgct 8129995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 15330103 - 15330014
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaa 396  Q
    |||||||||||||| ||||||| | |||||||| | |||||| |||||| ||| |||||| ||||||||||| |||| ||||||| ||||    
T  15330103 gggttaaataagtatatggtcctcctaaatatatccacatttaattttaatcctcttaaattatttcttaggctttttatccctccaaaa 15330014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 424
Target Start/End: Original strand, 9686292 - 9686410
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttga-ttttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||  || || ||||||||| || |||||| |||||||||||   |||||||| ||| | ||||| ||  ||||||| |||| |||    
T  9686292 gggttaaataagtaaataatctccctaaatatactaatatttgatttttagtccccaaaaaatattttttaagcttttggtcgttctaaaatttttcatt 9686391  T
Q  406 tttgaaattagtctctgct 424  Q
    | |||||||||||||||||    
T  9686392 tatgaaattagtctctgct 9686410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 18881105 - 18881190
Alignment:
Q  301 atttgtagggttaaataagtaaatggtccccttaa--atataccaacatttgattttagtcccctt-aaatatttcttaggttttt 383  Q
    ||||||||||| |||||||| ||| |||||| |||  ||||||||||||||||||||||| || || |||||||  ||||||||||    
T  18881105 atttgtagggtaaaataagtgaatagtccccataaatatataccaacatttgattttagttcctttaaaatattctttaggttttt 18881190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 7760607 - 7760697
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||||||||  |||   ||||||||||| ||| |||||||||| ||||| |||||||  ||||| ||||| |||||| ||||    
T  7760607 agggttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctccaaaa 7760697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 23797062 - 23797121
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    |||||||||||||||||||||| ||  |||||| |  || ||||||||||||||||||||||    
T  23797062 tagggttaaataagtaaatggttcc--taaatacataaaaatttgattttagtccccttaaa 23797121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 424
Target Start/End: Original strand, 31212313 - 31212430
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||  ||||| ||||| |||||||||||  ||  ||||    
T  31212313 gggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttggtccctctaaaaaattctattt 31212412  T
Q  407 ttgaaattagtctctgct 424  Q
     |||||||||||||||||    
T  31212413 atgaaattagtctctgct 31212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 33892034 - 33892147
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccct-taaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||  |||||||  ||||||||||| ||| ||||||| |||| ||    
T  33892034 tagggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttcat 33892133  T
Q  405 ttttgaaattagtc 418  Q
     | |||||||||||    
T  33892134 ctatgaaattagtc 33892147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 6906527 - 6906435
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||| |||| ||||    
T  6906527 gttaaataagtaaacggtccccctaaatataccaacatttgattttagtccccataaaatattttttaggcttttgatccctccaaaaatttt 6906435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 424
Target Start/End: Original strand, 9861568 - 9861685
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    ||||||||||||||||| |||| | |||||||| ||||||||||||||||||||  | |||||||  ||||| ||||| ||||||||||| |||| ||||    
T  9861568 gggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaaaatttttcattt 9861667  T
Q  407 ttgaaattagtctctgct 424  Q
     ||||||||||| |||||    
T  9861668 atgaaattagtccctgct 9861685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 15229614 - 15229727
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||  | |||||||  || |  ||||||||||||||||| |||| ||    
T  15229614 tagggttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatattcttttgacttttgatccctctaaaattttttat 15229713  T
Q  405 ttttgaaattagtc 418  Q
    || |||||||||||    
T  15229714 ttatgaaattagtc 15229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 31212542 - 31212441
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| | |||||||  ||||||||||| | ||||||||| |||| ||    
T  31212542 tagggttaaataagtaaatagtctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttgtttcctctaaaatttttcat 31212443  T
Q  405 tt 406  Q
    ||    
T  31212442 tt 31212441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 33892294 - 33892181
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||   ||  ||||||||||||||||||||||||||||||| || |||||||  ||| ||||||| ||||||||||| |||| ||    
T  33892294 tagggttaaataagtaaacaatcttcttaaatataccaacatttgattttagtccctttaaaatattctttatgtttttggtccctctaaaatttttcat 33892195  T
Q  405 ttttgaaattagtc 418  Q
    || |||||||||||    
T  33892194 ttatgaaattagtc 33892181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 10070117 - 10069998
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||||||||||||| |||| || ||| |||||||||||| |||| |||||| ||| ||| |||||||| ||||||||||| ||||||||||| |||| ||    
T  10070117 tagggttaaataagcaaatagttcccctaaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaaaatttttcat 10070018  T
Q  405 ttttgaaattagtctctgct 424  Q
     | ||||||||||| |||||    
T  10070017 ctatgaaattagtccctgct 10069998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 14148394 - 14148472
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggttttt 383  Q
    ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  14148394 tagggtttaataagtaagtggtccccctaaatatatcaacatttgattttagtcctcctaaaatatttcttaggttttt 14148472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 6906259 - 6906374
Alignment:
Q  303 ttgtagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| | ||||||| |||||| ||||| ||| || |||| ||||    
T  6906259 ttgtagggttaaataagtaaatagtccccctaaatataccaacatttga-tttagtccccataaaatattccttaggcttttggtccttccaaaattttt 6906357  T
Q  402 aatttttgaaattagtc 418  Q
     ||   |||||||||||    
T  6906358 catccatgaaattagtc 6906374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 8791965 - 8791877
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctcta 393  Q
    ||||||||||||||||||| || | ||||||||||| |||||||||||||| ||| | | ||||||||||||||||||| |||||||||    
T  8791965 tagggttaaataagtaaatagttctcttaaatatactaacatttgattttaatcctcataaaatatttcttaggttttttatccctcta 8791877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 7765953 - 7766039
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||| |||||||||   |||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||  ||||||||    
T  7765953 gttaaataattaaatggtctttttaaatataccaacatttaattttagccccctaaaatatttcttaggattttgatttctctaaaa 7766039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 415
Target Start/End: Complemental strand, 29242928 - 29242820
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||| ||||||| |||| || |||||||||||||||||||| || ||| |||||||||||||| | |||||| |||| |||| |||    
T  29242928 agggttaaataagtaaattgtcccctaaaat-tatcaacatttgattttagtccctctaaaaaatttcttaggttttcggtccctccaaaaattttcatt 29242830  T
Q  406 tttgaaatta 415  Q
      ||||||||    
T  29242829 catgaaatta 29242820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 424
Target Start/End: Original strand, 8791735 - 8791827
Alignment:
Q  333 taaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaacttttaatttttgaaattagtctctgct 424  Q
    |||||||| ||||||||||||||| || |||  |||||||| ||||||||||| ||||||||||| |||| || | |||||||||||||||||    
T  8791735 taaatatatcaacatttgattttactcaccccaaaatatttgttaggtttttggtccctctaaaatttttcatctatgaaattagtctctgct 8791827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 20691273 - 20691332
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  20691273 agggttaaataagtaaatgg-ccccttaaatataccaaaatttgattttattccccctaaa 20691332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 36874336 - 36874424
Alignment:
Q  334 aaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaatttttgaaattagtctct 421  Q
    |||||| ||||||||| |||||||| || || ||||||| |||||||||||| |||||||||||  | | |||| ||||||||||||||    
T  36874336 aaatatgccaacatttaattttagttcctctaaaatattccttaggtttttggtccctctaaaaaatgttatttatgaaattagtctct 36874424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 39484810 - 39484723
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||||||||||||| ||| |||||||| ||||||||  ||||| || |||| |||||||||||||| ||||| |||||| ||||    
T  39484810 ggttaaataagtaaatggttcccctaaatatatcaacattt-tttttaatctccctaaaatatttcttaggattttggtccctccaaaa 39484723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 37037360 - 37037306
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc 361  Q
    |||||||||||||||||||||||  || |||||| |||||||||||||||||||||    
T  37037360 tagggttaaataagtaaatggtcttct-aaatattccaacatttgattttagtccc 37037306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 14148937 - 14148864
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaa-atatttcttaggtttttg 384  Q
    |||||||| |||||| |||  ||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||    
T  14148937 ttaaataactaaatgatcct-ttaaatataccaacatttgattttagtccccctaacatattttttaggcttttg 14148864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 29242430 - 29242539
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||| | |||||  |||| |||||||||||| ||||||||||| || |||||||  ||||| ||||| | ||||||||| |||| ||    
T  29242430 tagggttaaataagtaacttgtccctctaaa-ataccaacattttattttagtccctctaaaatattcattaggcttttggttcctctaaaagtttttat 29242528  T
Q  405 ttttgaaatta 415  Q
     | ||||||||    
T  29242529 ctatgaaatta 29242539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 5879873 - 5879926
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc 359  Q
    ||||||||||||||||||| ||| || ||||||||| || ||||||||||||||    
T  5879873 tagggttaaataagtaaatagtctccctaaatatactaatatttgattttagtc 5879926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 27503745 - 27503696
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagt 358  Q
    ||||||||||||||||| | | |||||||||| ||| |||||||||||||    
T  27503745 ggttaaataagtaaatgattcacttaaatatatcaatatttgattttagt 27503696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 31943244 - 31943181
Alignment:
Q  313 aaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttctta 376  Q
    ||||||||||||| |||| | ||||||| ||||||||||||||||| | ||| ||||||||||||    
T  31943244 aaataagtaaatgatcccat-aaatatatcaacatttgattttagttctcttaaaatatttctta 31943181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 13340701 - 13340582
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||||||||||| | |||| |||||||||||||||| |||||||||||||||||||| | |||||||  ||||||||||| |||||||||||  ||| ||    
T  13340701 tagggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaaatttcat 13340602  T
Q  405 ttttgaaattagtctctgct 424  Q
    || ||||||||||| |||||    
T  13340601 ttatgaaattagtccctgct 13340582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 6190567 - 6190645
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttg 384  Q
    ||||||||| |||||||||| || || |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  6190567 tagggttaactaagtaaatgatctccctaaatatatcaacatttgattttagtctccttaaatatttcttaggtttttg 6190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 34637682 - 34637569
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| ||| || |||||||| |||||||||||||||| |||||| |||||||  | ||||||||| ||||||||||| |||| ||    
T  34637682 tagggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaaaatttttcat 34637583  T
Q  405 ttttgaaattagtc 418  Q
    ||  ||||||||||    
T  34637582 ttaagaaattagtc 34637569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 31298982 - 31298864
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||| || |||||||  ||||| ||||| ||||||||||  |||| ||    
T  31298982 tagggttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatattctttaggcttttgctccctctaaattttttcat 31298883  T
Q  405 ttttgaaattagtctctgc 423  Q
     |  |||||||||||||||    
T  31298882 ctacgaaattagtctctgc 31298864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 308 - 424
Target Start/End: Original strand, 34637425 - 34637541
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttt 407  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||  | ||  ||||| ||||| |||||   || ||||     
T  34637425 gggttaaataagtaaatagtctccataaatataccaacatttgattttagtcccctaaaatattcttgagacttttggtccctttaaaaaaattcattta 34637524  T
Q  408 tgaaattagtctctgct 424  Q
    |||||||||||| ||||    
T  34637525 tgaaattagtctatgct 34637541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 13340445 - 13340496
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc 361  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtccc 13340496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 31298722 - 31298813
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaa 396  Q
    |||||||||||||||||||| || | ||||| |||||||||||| |||||| |||| || |||||||||||||| ||||| |||||||||||    
T  31298722 tagggttaaataagtaaatgatctctttaaaaataccaacatttaattttaatccctctaaaatatttcttaggcttttggtccctctaaaa 31298813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 12289979 - 12290063
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccct 390  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||||| |  ||| ||||||| | ||||||||||||||||    
T  12289979 agggttaaataagtaaatagtctccctaaatataccaacatttgattttagcctgcctaaaatattccctaggtttttgatccct 12290063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 30519676 - 30519791
Alignment:
Q  303 ttgtagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||| |||||||||||||||||||||  || ||||||||||||||||||||||| || | || |||||||  ||| ||||||| ||||||||||| ||||    
T  30519676 ttgttgggttaaataagtaaatggtcgtct-aaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaattttt 30519774  T
Q  402 aatttttgaaattagtc 418  Q
     ||   |||||||||||    
T  30519775 catccatgaaattagtc 30519791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 7359674 - 7359593
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccc 389  Q
    |||||||||||||| | ||| || |||||||||||||||||||||||| | ||||| |||||||  ||||| ||||||||||    
T  7359674 ggttaaataagtaactcgtcgccctaaatataccaacatttgattttactccccctaaaatattatttaggcttttgatccc 7359593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 12290226 - 12290175
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt 358  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  12290226 tagggttaaataagtaaatgatcccc-taaatataccaacatttaattttagt 12290175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 14365180 - 14365097
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaa 394  Q
    ||||||||||||||||||||  ||| |||| |||||||||||||||||||  || |||||||||||||  ||||| |||||||||    
T  14365180 ttaaataagtaaatggtcccagtaa-tatatcaacatttgattttagtccatctaaaatatttcttagaattttggtccctctaa 14365097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 24704308 - 24704396
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    |||| |||||||||||||| ||  |||||||||||| |||||||||||||| |||| |||||||  ||| | ||||| |||||||||||    
T  24704308 ggttgaataagtaaatggttcctctaaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaaaa 24704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 403305 - 403386
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatc 387  Q
    ||||||||||||||||||| |||||  |||||| || || |||| |||||| ||| || |||||||  ||||||||||||||    
T  403305 tagggttaaataagtaaatagtccctctaaataaactaatatttaattttaatcctctaaaatattctttaggtttttgatc 403386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 19045118 - 19045057
Alignment:
Q  336 atataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    |||||||||||||||||||||||||  || |||||||||||| ||||| ||| |||| ||||    
T  19045118 atataccaacatttgattttagtccttctaaaatatttcttatgttttcgatacctcaaaaa 19045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 10284459 - 10284399
Alignment:
Q  308 gggttaaataa-gtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    ||||||||||| ||||||| |||||||||||| |  |||||||||||||| || |||||||    
T  10284459 gggttaaataaagtaaatgatccccttaaatacagtaacatttgattttaatctccttaaa 10284399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 54164724 - 54164605
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |  | |||||||| ||||||||| | ||||||||||| |||| ||    
T  54164724 tagggttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaatttttcat 54164625  T
Q  405 ttttgaaattagtctctgct 424  Q
    || ||||||||||| |||||    
T  54164624 ttatgaaattagtcactgct 54164605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 53343707 - 53343780
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttt 382  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||| | || ||||||||||||||||||    
T  53343707 gttaaataagtaaatggtcctcttaaatataccaacgtttgattttagtctcgttaaaatatttcttaggtttt 53343780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 54164465 - 54164580
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||| |||    |||||||||||||||||||||||||||| | | |||||| | ||||| ||||| ||| ||||||| |||| |||    
T  54164465 agggttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatattttaggcttttggtccatctaaaatttttcatt 54164564  T
Q  406 tttgaaattagtctct 421  Q
    | ||||||||||||||    
T  54164565 tatgaaattagtctct 54164580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 34665235 - 34665123
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| ||| |||| ||  ||| |||    
T  34665235 agggttaaataagtaaatggtaatattaaatataccaacatttgattttagtcaccctaaaatattttttaggcttttgttccttctacaaaatttcatt 34665136  T
Q  406 tttgaaattagtc 418  Q
      |||||||||||    
T  34665135 gatgaaattagtc 34665123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 17430713 - 17430793
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatc 387  Q
    ||||||| ||| ||||| |||||  ||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||    
T  17430713 gggttaagtaaataaattgtccctctaaatataccaacatttgattttagtccctctaaaatattccttaggcttttgatc 17430793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 32185283 - 32185390
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaacttttaatttttg 409  Q
    ||||||| ||||||| |||||  |||||||||||||||||||||||||||||  |||| | |||||||||| ||| || |||||||| |||| | |  ||    
T  32185283 gttaaatgagtaaatagtccctctaaatataccaacatttgattttagtccctctaaa-aattcttaggttgttggtctctctaaaatttttcaatcatg 32185381  T
Q  410 aaattagtc 418  Q
    |||||||||    
T  32185382 aaattagtc 32185390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 32186722 - 32186616
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||| |||||||||| |||||||||||||||||| ||||||| ||| || |||||||  ||||| ||||| || |||||||| |||| ||||    
T  32186722 gggttaaataagaaaatggtccc-ttaaatataccaacatttaattttagttcctctaaaatattctttaggcttttggtctctctaaaa-ttttcattt 32186625  T
Q  407 ttgaaatta 415  Q
     ||||||||    
T  32186624 atgaaatta 32186616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 34665005 - 34665069
Alignment:
Q  333 taaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatccctctaaaa 396  Q
    ||||||||| |||||||||||||||||||||| |||||||  |||||||||||| ||||||||||    
T  34665005 taaatatactaacatttgattttagtccccttaaaatattctttaggtttttgacccctctaaaa 34665069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 33752791 - 33752712
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttg 384  Q
    |||||||||||||||||| |||||  ||||||||| |||||||||||||||||| |||| |||||||  ||||| |||||    
T  33752791 tagggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatattctttaggcttttg 33752712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 13552917 - 13552819
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||| |||| | |||||||| ||| ||||||||||||||||| | |||||||  ||||| ||||| ||| ||||||| |||| ||||    
T  13552917 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcattt 13552819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 17431208 - 17431122
Alignment:
Q  316 taagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    ||||||||||||||   |||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||| |||||| |||| ||||    
T  17431208 taagtaaatggtccatctaaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaatttt 17431122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 7513526 - 7513639
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||| |  ||  ||||||||||||||||| |||||| |  ||||||| ||||| ||||| ||||| | | ||||||| |||| |||    
T  7513526 agggttaaataagtaaatagctcctctaaatataccaacatttaattttaattaccttaaaatattttttaggcttttggttcatctaaaatttttcatt 7513625  T
Q  406 tttgaaattagtct 419  Q
    | ||||||||||||    
T  7513626 tatgaaattagtct 7513639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 28687459 - 28687572
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||||||||||| |||||||  ||| |||||||||||||||||| |||||| || | || ||||||| |||| | ||||| ||| ||||||| |||| ||    
T  28687459 tagggttaaatatgtaaatgagccctttaaatataccaacatttaattttaatctctctaaaatattccttatgcttttggtccatctaaaaattttcat 28687558  T
Q  405 ttttgaaattagtc 418  Q
     | |||||||||||    
T  28687559 atgtgaaattagtc 28687572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 17250463 - 17250539
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggtttttg 384  Q
    |||||||||||||||||||||    |||||||| |||||||||||||| | ||||| ||||||||||||| ||||||    
T  17250463 ggttaaataagtaaatggtccttccaaatatacaaacatttgattttatttcccttaaaatatttcttagatttttg 17250539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 424
Target Start/End: Original strand, 13552669 - 13552787
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttga-ttttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||||||||  || || ||||||||| || |||||| |||||||||||   |||||||| ||| | ||||| ||  ||||||| |||| |||    
T  13552669 gggttaaataagtaaataatctccctaaatatactaatatttgatttttagtccccaaaaaatattttttaagcttttggtcgttctaaaatttttcatt 13552768  T
Q  406 tttgaaattagtctctgct 424  Q
    | |||||||||||||||||    
T  13552769 tatgaaattagtctctgct 13552787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 28687716 - 28687623
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    ||||||||||||||||| || |  ||||||||| |||||||||||||||| | | || |||||||| ||||| ||||| ||||||||||| ||||    
T  28687716 gggttaaataagtaaatagttct-ttaaatatatcaacatttgattttagttactctaaaatattttttagggttttggtccctctaaaattttt 28687623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 17168864 - 17168810
Alignment:
Q  335 aatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatcc 388  Q
    ||||||| ||||||||||||||||||| || |||||||| |||| ||||||||||    
T  17168864 aatatacaaacatttgattttagtccctttaaaatattttttagatttttgatcc 17168810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 17174436 - 17174382
Alignment:
Q  335 aatataccaacatttgattttagtcccctt-aaatatttcttaggtttttgatcc 388  Q
    ||||||| ||||||||||||||||||| || |||||||| |||| ||||||||||    
T  17174436 aatatacaaacatttgattttagtccctttaaaatattttttagatttttgatcc 17174382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 14760131 - 14760019
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||| |||| |||||| |||| ||    
T  14760131 tagggttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatattttttaggcttttggtccc-ctaaaatttttcat 14760033  T
Q  405 ttttgaaattagtc 418  Q
     | |||||||||||    
T  14760032 ctatgaaattagtc 14760019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 22679580 - 22679494
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaa 395  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||    
T  22679580 gttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaaa 22679494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 424
Target Start/End: Complemental strand, 16706597 - 16706474
Alignment:
Q  305 gtagggttaaataagtaaatggtccccttaaatat---accaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttt 400  Q
    ||||||||||||| |||||| |||||| |||||||   ||||||||||||||||||| ||||| |||||||  ||||||||||| ||||||||||| |||    
T  16706597 gtagggttaaatatgtaaatagtccccctaaatataccaccaacatttgattttagtccccctaaaatattctttaggtttttggtccctctaaaatttt 16706498  T
Q  401 taatttttgaaattagtctctgct 424  Q
      || | | |||||||||||||||    
T  16706497 ccatctatcaaattagtctctgct 16706474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 418
Target Start/End: Complemental strand, 15393407 - 15393300
Alignment:
Q  311 ttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa-tatttcttaggtttttgatccctctaaaacttttaatttttg 409  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||| ||||| ||||||||||| || || | ||| |||| |||| ||    
T  15393407 ttaaataagtaaatggtcccccgaaatataccaacatttgatttcagtccccctaaaatattt-ttaggtttttggtctctttgaaatttttcatttatg 15393309  T
Q  410 aaattagtc 418  Q
    |||||||||    
T  15393308 aaattagtc 15393300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 13765561 - 13765667
Alignment:
Q  313 aaataagtaaatggtccccttaaatataccaacatttgattttagtcccc-ttaaatatttcttaggtttttgatccctctaaaacttttaatttttgaa 411  Q
    ||||||||||||  || || |||||||||||||||||||||||||||||| | |||||||  ||||||||||| ||||| ||| | |||| |||| ||||    
T  13765561 aaataagtaaataatctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttggtccctttaatatttttcatttatgaa 13765660  T
Q  412 attagtc 418  Q
    |||||||    
T  13765661 attagtc 13765667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 30746773 - 30746849
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggttttt 383  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||  |||| |||||||  ||||||||||    
T  30746773 gggttaaataagtaaatggtccccttaaatatactaatatttgattttagtttccttaaaatattctttaggttttt 30746849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 30768224 - 30768300
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccctt-aaatatttcttaggttttt 383  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||  |||| |||||||  ||||||||||    
T  30768224 gggttaaataagtaaatggtccccttaaatatactaatatttgattttagtttccttaaaatattctttaggttttt 30768300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 30748951 - 30749062
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||||||||| | ||||||||| || ||||||||||||| ||||| |||||||  ||||| ||||| |||||  |||| |||| || |    
T  30748951 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcatct 30749050  T
Q  407 ttgaaattagtc 418  Q
     |||||||||||    
T  30749051 atgaaattagtc 30749062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 30770402 - 30770513
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccctctaaaacttttaattt 406  Q
    |||||||||||||||||||||| | ||||||||| || ||||||||||||| ||||| |||||||  ||||| ||||| |||||  |||| |||| || |    
T  30770402 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcatct 30770501  T
Q  407 ttgaaattagtc 418  Q
     |||||||||||    
T  30770502 atgaaattagtc 30770513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 20171395 - 20171472
Alignment:
Q  314 aataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctc 391  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||  ||||| ||||||    
T  20171395 aataagtaaatggtctccttaa-tataccaacatttgattttagtccctctaaaatatttcttagacttttggtccctc 20171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 16706333 - 16706450
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc-cttaaatatttcttaggtttttgatccctctaaaacttttaat 404  Q
    ||||||||||| || ||||  ||||  ||||||||||||||||||||||||||||| || |||| ||  ||||| ||||| ||| ||||||| |||| ||    
T  16706333 tagggttaaatgagaaaatattccctctaaatataccaacatttgattttagtccctctaaaattttctttaggcttttggtccttctaaaatttttcat 16706432  T
Q  405 ttttgaaattagtctctg 422  Q
     | |||||||||||||||    
T  16706433 ctatgaaattagtctctg 16706450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 35294332 - 35294445
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||||| |||||| |||| ||||||||| |||||||||||||||||||  |  |||||||||| ||| ||||| |||||| |||| |||  |||    
T  35294332 agggttaaataattaaatgatccctttaaatatatcaacatttgattttagtccatcgaaaatatttctgaggcttttggtccctccaaaattttacatt 35294431  T
Q  406 tttgaaattagtct 419  Q
      ||||||||||||    
T  35294432 catgaaattagtct 35294445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 14759951 - 14760005
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccc 361  Q
    |||||||| ||||||||||||||  || ||||||||||||||||||||||||||||    
T  14759951 tagggttacataagtaaatggtcgtct-aaatataccaacatttgattttagtccc 14760005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 32800381 - 32800271
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcc-ccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    ||||| |||||||||||| |||||  |||||||| ||| ||||||||||| ||| | | |||||||   |||||||||| ||||||||||| |||| ||     
T  32800381 agggtcaaataagtaaatagtcccactaaatatatcaatatttgattttaatcctcataaaatattatgtaggtttttggtccctctaaaattttttatg 32800282  T
Q  406 tttgaaattag 416  Q
    | |||||||||    
T  32800281 tatgaaattag 32800271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 51900116 - 51900173
Alignment:
Q  310 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    ||||||||||||||||||||   ||||||| ||||||||||||||||||  |||||||    
T  51900116 gttaaataagtaaatggtccttctaaatattccaacatttgattttagtttccttaaa 51900173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 30749198 - 30749102
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgatttt-agtccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||||||| ||||||  ||| | |||||||| |||||||||||||| | ||| || |||||||| ||| ||||||| | ||||||||| ||||    
T  30749198 tagggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaattttt 30749102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 30770649 - 30770553
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgatttt-agtccccttaaatatttcttaggtttttgatccctctaaaactttt 401  Q
    |||||||||||| ||||||  ||| | |||||||| |||||||||||||| | ||| || |||||||| ||| ||||||| | ||||||||| ||||    
T  30770649 tagggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaattttt 30770553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 39255453 - 39255539
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatatttcttaggtttttgatccctctaaaa 396  Q
    |||||| |||| ||||||| |||| || ||||| |||||||||||||| |||| | |||||||||||| | ||||| | |||||||||    
T  39255453 ggttaagtaaggaaatggttccct-aagtatacaaacatttgattttattcccttaaaatatttcttaagcttttggttcctctaaaa 39255539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 15393145 - 15393227
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagt-ccccttaaatatttcttaggtttttgatccc 389  Q
    ||||||||||||||||| |||| |  ||||||||||| |||| ||||| || ||||| ||||||| |||||| ||||| ||||    
T  15393145 gggttaaataagtaaatagtcctcacaaatataccaatatttaattttcgtccccctaaaatattccttaggcttttggtccc 15393227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 22679330 - 22679396
Alignment:
Q  301 atttgtagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaa 367  Q
    |||| ||||||||||||||||||| |||||  | |||||| |||||| |||||||| ||||| ||||    
T  22679330 atttctagggttaaataagtaaatagtccctctgaatatatcaacatatgattttaatccccctaaa 22679396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 35215031 - 35215097
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtccccttaaatattt 372  Q
    ||||||||||||||||| | |||||  |||||||||||| ||||||| ||| |||| | ||||||||    
T  35215031 tagggttaaataagtaattagtccctctaaatataccaatatttgatcttaatcccataaaatattt 35215097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 30747018 - 30746938
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccct-taaatatttcttaggtttttgat 386  Q
    |||||||||||||||||||  ||  | ||||||||||||||||| ||||||||||| |  ||||||| ||||| ||||||||    
T  30747018 tagggttaaataagtaaataatcatc-taaatataccaacatttcattttagtcccttcaaaatattccttagatttttgat 30746938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 30768469 - 30768389
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcccct-taaatatttcttaggtttttgat 386  Q
    |||||||||||||||||||  ||  | ||||||||||||||||| ||||||||||| |  ||||||| ||||| ||||||||    
T  30768469 tagggttaaataagtaaataatcatc-taaatataccaacatttcattttagtcccttcaaaatattccttagatttttgat 30768389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 39785218 - 39785267
Alignment:
Q  306 tagggttaaataagtaaatggtccccttaaatataccaacatttgatttt 355  Q
    |||| |||||||||||||| |||||| |||| |||||||||||| |||||    
T  39785218 taggattaaataagtaaatagtccccctaaaaataccaacatttaatttt 39785267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 424
Target Start/End: Complemental strand, 64082 - 63964
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttag-tccccttaaatatttcttaggtttttgatccctctaaaacttttaatt 405  Q
    |||||||||| ||||||| ||| || ||||||||||||||||| ||||||| |||||| |||||||  ||||||||||  ||||||| ||| |||| ||     
T  64082 agggttaaatcagtaaatagtctccctaaatataccaacatttaattttagttcccctaaaatattatttaggtttttagtccctctcaaatttttcatc 63983  T
Q  406 tttgaaattagtctctgct 424  Q
    | ||||||||||| |||||    
T  63982 tatgaaattagtccctgct 63964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 11708 - 11623
Alignment:
Q  308 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc-cccttaaatatttcttaggtttttgatccctct 392  Q
    ||||||||||| ||||||||  | |||||||||| || |||||||||||||| | || |||||||||||||||||||| |||||||    
T  11708 gggttaaataaataaatggttgctttaaatatacgaatatttgattttagtcactctaaaatatttcttaggtttttggtccctct 11623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 30310 - 30362
Alignment:
Q  307 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc 359  Q
    |||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  30310 agggttaaataagtgaatggtccccataaatatactaacatttgattttagtc 30362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 6273 - 6317
Alignment:
Q  309 ggttaaataagtaaatggtccccttaaatataccaacatttgattt 354  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||    
T  6273 ggttaaataaataaatggtctc-ttaaatataccaacatttgattt 6317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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