View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_52 (Length: 415)
Name: NF11278_low_52
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 6910240 - 6909856
Alignment:
| Q |
20 |
tgctttatacatatataccaactccacatactcgaacttaaaataaaaattggtattttcattagaaaataatttcactttaccaactgaatttaaatct |
119 |
Q |
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| T |
6910240 |
tgctttatacatatataccaacttcacatactcgaacttaaaataaaaattggtattttcattagaaaataatttcactttaccaactgaatttaaatct |
6910141 |
T |
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| Q |
120 |
aacggaagtggtagattcttacaactgaatttatcgaataaaattattacaaatagaataaacctaaaagaaaatgttaatttctttccgtaataaaatt |
219 |
Q |
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| T |
6910140 |
aacggaagtggtagattcttacaactgaatttatcgaataaaattattacaaatagaataaacctaaaataaaatgttaatttctttccgtaataaaatt |
6910041 |
T |
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| Q |
220 |
caagcttcaaacgatacatcgatttcttggaagtctctaagcaaaaacaatagataaagtttttgtgagataagttaggtgaagaaggaaaaacaaaggt |
319 |
Q |
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| T |
6910040 |
caagcttcaaacgatacatcgatttcttggaagtctctaagcaaaaacaatagattaag-ttttgtgagataagttaggtgaagaaggaaaaacaaaggt |
6909942 |
T |
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| Q |
320 |
tattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatc |
405 |
Q |
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| T |
6909941 |
tattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatc |
6909856 |
T |
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