View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_55 (Length: 411)
Name: NF11278_low_55
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 17239824 - 17239445
Alignment:
| Q |
18 |
aatttaatgtgtacaattcttgtgacatgcatgtgatcaagcatgagcaaaattcggtatctttcattgttgctttatttaataacccatagatttggtc |
117 |
Q |
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| T |
17239824 |
aatttaatgtgtacaattcttgtgacatgcatgtgatgaagcatgagcaaaattcggtatctttcattgttgctttatttaataacccatagatttggtc |
17239725 |
T |
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| Q |
118 |
aaacctaatggaagtgagttcaatttgaagtggagaatagtatatagggttggcacactccttgcagccccccaattgaaaatcaataaattaattagtt |
217 |
Q |
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| T |
17239724 |
aaacctaatggaagtgagttcaatttgaagtggagaatagtatatagggttggcacactccttgcagccccccaattgaaaatcaataaattaattagtt |
17239625 |
T |
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| Q |
218 |
cctctatattgtttggattttgtgacaattttttaggtatatacttctagctttagtactatcctagttgaggaattatagactcaacaaccatattgta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17239624 |
cctctatattgtttggattttgtgacaattttttaggtatatacttctagctttagtactatcctagttaaggaattatagactcaacaaccatattgta |
17239525 |
T |
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| Q |
318 |
cttctaaaggtttatagaattaatattgattaaacctttttgtaatattcttcttgtgattattgactgccgttgatgtcc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17239524 |
cttctaaaggtttatagaattaatattgattaaaccttttt-taatattcttcttgtgattattgactgccgttgatgtcc |
17239445 |
T |
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