View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_56 (Length: 411)
Name: NF11278_low_56
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 404
Target Start/End: Complemental strand, 1383177 - 1382784
Alignment:
| Q |
21 |
taattacaagtgtgtgtgcaagcctgccgcaaaagatcatatatatgctggctggttactaacataatctattttgattgctttttctatagattgctca |
120 |
Q |
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| T |
1383177 |
taattacaagtgtgtgtgcacgcccgccgcaaaagatcatatatatgctggctggttactaacataatctattttgattgctttttctatagattgctca |
1383078 |
T |
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| Q |
121 |
agagaaccgcaaggaacacgaatccatcctgaattcagagcaacctcatattattgtaagtgttgttacaatcttgtaattttattatttcaatttacca |
220 |
Q |
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| T |
1383077 |
agagaaccgcaaggaacacgaatccatcctgaattcagagcaacctcgtattattgtaagggttgttacaatcttgtaattttattatttcaatttatca |
1382978 |
T |
|
| Q |
221 |
ctgcttctaa-nnnnnnnat---------ttcaaggttgggaggcctgacctaatcttatatcacctaaaacacacccaaggattttctcttgctcttgc |
310 |
Q |
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| T |
1382977 |
ctgcttctaattttttttatttcttacccttcaaggttgggaggcctgacctaatcttatatcacctaaaacacacccaaggattttctcttgctcttgc |
1382878 |
T |
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| Q |
311 |
tagtttaaagtacctggtatgatttgattgataccgtttttacattattacaaaatcaaatatttcatatatcttgtctttactttctctgctc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1382877 |
tagtttaaagtacctggtatgatttgattgataccgtttttacattattacaaaatcaaatatttcatatatcttgtctttactttcactgctc |
1382784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 11924708 - 11924740
Alignment:
| Q |
271 |
atcacctaaaacacacccaaggattttctcttg |
303 |
Q |
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| T |
11924708 |
atcacctaaaacacaccgaaggattttctcttg |
11924740 |
T |
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