View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_58 (Length: 405)
Name: NF11278_low_58
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 48282834 - 48282940
Alignment:
| Q |
107 |
atcttgaggagtggtttcatgtcaaaaagtaatcctaaatcatccatatttgatggacataggagacggctagtaggagagagggctagtttttaatctt |
206 |
Q |
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| T |
48282834 |
atcttgaggggtgatttcatgtcaaaaagtaatcctaaatcatccatatttaatggacataggagacggctcgtaagagagagggctggtttttaatctt |
48282933 |
T |
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| Q |
207 |
atataat |
213 |
Q |
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| T |
48282934 |
atataat |
48282940 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 255 - 405
Target Start/End: Original strand, 48283027 - 48283177
Alignment:
| Q |
255 |
tgcacatgttgcattttggatactcgtaaatcatttcaaattaaatcgtaaatttttgaatcggatccannnnnnnnaaaaacgtcattcaaattgaacc |
354 |
Q |
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| T |
48283027 |
tgcacatgttgcattttggatattcataaattatttcaaattaaatcgtaaatgtttgaatcggatcaattttttttaaaatagtcattcaaatcgaacc |
48283126 |
T |
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| Q |
355 |
ctattatttgtcattttaaaaaatttcaggttattccctgtaatttcattt |
405 |
Q |
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| T |
48283127 |
atattatttgtcatttttacaaatttcagattattccctgcaattttattt |
48283177 |
T |
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