View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_6 (Length: 719)

Name: NF11278_low_6
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_6
NF11278_low_6
[»] chr2 (34 HSPs)
chr2 (1-700)||(5699386-5700088)
chr2 (49-163)||(12324430-12324544)
chr2 (74-159)||(8485881-8485966)
chr2 (46-163)||(31380499-31380618)
chr2 (306-392)||(28770878-28770964)
chr2 (337-394)||(2869829-2869886)
chr2 (337-394)||(3277908-3277965)
chr2 (436-479)||(12123434-12123477)
chr2 (337-383)||(8390284-8390330)
chr2 (441-479)||(11151438-11151476)
chr2 (337-394)||(23078606-23078663)
chr2 (337-408)||(14699129-14699198)
chr2 (337-381)||(17865121-17865165)
chr2 (439-479)||(29868154-29868194)
chr2 (439-479)||(39285120-39285160)
chr2 (435-493)||(4561352-4561411)
chr2 (441-479)||(723589-723627)
chr2 (441-479)||(5723098-5723136)
chr2 (441-479)||(6594846-6594884)
chr2 (337-383)||(8039976-8040022)
chr2 (441-479)||(11067588-11067626)
chr2 (109-163)||(11183882-11183936)
chr2 (337-383)||(20522136-20522182)
chr2 (337-383)||(31055958-31056004)
chr2 (337-383)||(33528756-33528802)
chr2 (441-479)||(34139615-34139653)
chr2 (349-383)||(34388775-34388809)
chr2 (441-479)||(38312528-38312566)
chr2 (441-479)||(45100042-45100080)
chr2 (337-394)||(10445579-10445636)
chr2 (349-390)||(12632466-12632507)
chr2 (438-479)||(13122044-13122085)
chr2 (442-479)||(33162296-33162333)
chr2 (443-484)||(36191098-36191139)
[»] chr5 (13 HSPs)
chr5 (46-163)||(34272244-34272361)
chr5 (46-163)||(15027014-15027130)
chr5 (350-420)||(30899742-30899810)
chr5 (337-383)||(3880216-3880262)
chr5 (337-383)||(12084311-12084357)
chr5 (337-419)||(2630110-2630193)
chr5 (349-383)||(14520145-14520179)
chr5 (337-383)||(19588662-19588708)
chr5 (441-479)||(30682765-30682803)
chr5 (441-479)||(39468391-39468429)
chr5 (441-479)||(42428273-42428311)
chr5 (230-313)||(30793237-30793324)
chr5 (349-394)||(34842509-34842554)
[»] chr6 (18 HSPs)
chr6 (49-165)||(6919321-6919437)
chr6 (45-156)||(29181491-29181602)
chr6 (337-394)||(22963605-22963662)
chr6 (337-394)||(23824731-23824788)
chr6 (337-383)||(5017603-5017649)
chr6 (66-139)||(8171134-8171206)
chr6 (82-163)||(10086065-10086146)
chr6 (337-381)||(18232763-18232807)
chr6 (95-151)||(30062991-30063047)
chr6 (438-516)||(4045693-4045772)
chr6 (337-383)||(4629869-4629915)
chr6 (441-479)||(5408912-5408950)
chr6 (441-479)||(5413237-5413275)
chr6 (441-479)||(9182873-9182911)
chr6 (337-383)||(10077300-10077346)
chr6 (439-477)||(28137255-28137293)
chr6 (449-499)||(30519238-30519287)
chr6 (441-479)||(31404517-31404555)
[»] chr7 (25 HSPs)
chr7 (46-162)||(32471262-32471378)
chr7 (66-163)||(39773170-39773267)
chr7 (46-163)||(29367426-29367543)
chr7 (441-479)||(29991341-29991379)
chr7 (439-479)||(31105242-31105282)
chr7 (437-503)||(30843302-30843369)
chr7 (337-383)||(55864-55910)
chr7 (337-383)||(4796802-4796848)
chr7 (441-475)||(8153625-8153659)
chr7 (441-479)||(18126934-18126972)
chr7 (337-383)||(20284005-20284051)
chr7 (437-479)||(23344249-23344291)
chr7 (441-479)||(23555329-23555367)
chr7 (442-476)||(24525351-24525385)
chr7 (441-479)||(25766799-25766837)
chr7 (337-383)||(29159719-29159765)
chr7 (441-479)||(35854204-35854242)
chr7 (441-479)||(47675979-47676017)
chr7 (441-479)||(48489719-48489757)
chr7 (337-383)||(49091578-49091624)
chr7 (439-476)||(495833-495870)
chr7 (337-394)||(2647831-2647888)
chr7 (437-506)||(23564884-23564953)
chr7 (442-479)||(36146254-36146291)
chr7 (337-394)||(46516445-46516502)
[»] chr8 (21 HSPs)
chr8 (46-164)||(32848074-32848192)
chr8 (49-163)||(9617997-9618111)
chr8 (67-163)||(17011727-17011821)
chr8 (67-163)||(17545380-17545474)
chr8 (47-161)||(39721287-39721403)
chr8 (340-394)||(5990699-5990753)
chr8 (436-516)||(32901992-32902073)
chr8 (439-479)||(1292311-1292351)
chr8 (439-479)||(12702473-12702513)
chr8 (439-479)||(19491545-19491585)
chr8 (439-479)||(41366460-41366500)
chr8 (351-394)||(7493210-7493253)
chr8 (437-479)||(8154064-8154106)
chr8 (441-479)||(15213074-15213112)
chr8 (337-383)||(26403365-26403411)
chr8 (441-479)||(30143628-30143666)
chr8 (441-479)||(34254173-34254211)
chr8 (439-476)||(1345221-1345258)
chr8 (442-479)||(5689556-5689593)
chr8 (436-516)||(11711808-11711889)
chr8 (439-476)||(40321361-40321398)
[»] chr4 (21 HSPs)
chr4 (45-168)||(45610535-45610659)
chr4 (337-391)||(37781771-37781825)
chr4 (46-125)||(5842125-5842204)
chr4 (50-136)||(5198896-5198982)
chr4 (337-408)||(5269326-5269394)
chr4 (337-387)||(10047291-10047341)
chr4 (339-381)||(16630817-16630859)
chr4 (337-383)||(38152573-38152619)
chr4 (95-163)||(23406518-23406586)
chr4 (439-479)||(48893485-48893525)
chr4 (50-136)||(4848723-4848810)
chr4 (436-478)||(5207693-5207735)
chr4 (441-479)||(5369924-5369962)
chr4 (441-479)||(5872105-5872143)
chr4 (337-383)||(25862157-25862203)
chr4 (441-479)||(29999671-29999709)
chr4 (441-479)||(37740913-37740951)
chr4 (441-479)||(46147238-46147276)
chr4 (441-479)||(48143336-48143374)
chr4 (441-479)||(56178478-56178516)
chr4 (337-390)||(42599709-42599762)
[»] chr1 (27 HSPs)
chr1 (78-163)||(29274471-29274555)
chr1 (437-516)||(37282501-37282581)
chr1 (337-394)||(47704071-47704128)
chr1 (439-479)||(23555113-23555153)
chr1 (105-160)||(32897267-32897322)
chr1 (441-478)||(10925510-10925547)
chr1 (337-394)||(29651716-29651773)
chr1 (439-479)||(834012-834052)
chr1 (439-479)||(41361196-41361236)
chr1 (351-387)||(48382631-48382667)
chr1 (439-479)||(50167022-50167062)
chr1 (100-163)||(12900713-12900776)
chr1 (441-480)||(13316193-13316232)
chr1 (63-161)||(13399978-13400079)
chr1 (337-383)||(775588-775634)
chr1 (441-479)||(3157153-3157191)
chr1 (441-479)||(8550626-8550664)
chr1 (337-383)||(13598314-13598360)
chr1 (439-493)||(15820582-15820636)
chr1 (337-383)||(27104507-27104553)
chr1 (447-501)||(44649992-44650046)
chr1 (45-127)||(49138095-49138177)
chr1 (441-479)||(49918638-49918676)
chr1 (95-124)||(4625300-4625329)
chr1 (439-480)||(13659192-13659233)
chr1 (337-394)||(40816867-40816924)
chr1 (442-479)||(45644200-45644237)
[»] chr3 (22 HSPs)
chr3 (438-516)||(27305522-27305600)
chr3 (46-163)||(46505886-46506003)
chr3 (98-163)||(14594845-14594910)
chr3 (337-383)||(8370612-8370658)
chr3 (337-383)||(27026861-27026907)
chr3 (439-479)||(22834849-22834889)
chr3 (340-383)||(35925398-35925441)
chr3 (439-474)||(44700331-44700366)
chr3 (340-383)||(48438130-48438173)
chr3 (437-479)||(2074924-2074966)
chr3 (441-479)||(7762554-7762592)
chr3 (441-479)||(9635966-9636004)
chr3 (337-383)||(26298904-26298950)
chr3 (337-379)||(27038210-27038252)
chr3 (441-479)||(29813349-29813387)
chr3 (337-383)||(40592908-40592954)
chr3 (441-479)||(40734785-40734823)
chr3 (441-479)||(40735670-40735708)
chr3 (349-383)||(47924009-47924043)
chr3 (439-480)||(16499300-16499341)
chr3 (442-479)||(29196232-29196269)
chr3 (436-484)||(40519107-40519156)
[»] scaffold0012 (1 HSPs)
scaffold0012 (98-163)||(41910-41975)
[»] scaffold0148 (1 HSPs)
scaffold0148 (337-394)||(10634-10691)
[»] scaffold0076 (1 HSPs)
scaffold0076 (337-394)||(16124-16181)
[»] scaffold1668 (1 HSPs)
scaffold1668 (441-479)||(1344-1382)
[»] scaffold0006 (3 HSPs)
scaffold0006 (337-383)||(2408-2454)
scaffold0006 (337-383)||(5599-5645)
scaffold0006 (439-480)||(148953-148994)


Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 5700088 - 5699386
Alignment:
1 gagagacttcaatcatttttcttcatacctt----tgattctcattggcctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtg 96  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
5700088 gagagacttcaatcatttttcttcataccttctgttgattctcattggcctatttatgcacagcccaaacttccttgattttaggatcactagtcacgtg 5699989  T
97 tccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataacaaaagatggtagaaattagggtttgttgcttgtt 196  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||    
5699988 ttcatttaccttaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataactgaaaatggtagaaattagggtttgttgtttgtt 5699889  T
197 gaaattagtttcttgtaatctttttgtatctcgttgatagtgaagtggagagatctctccccagagtatgttattgttggaccaaatcaagaaaatattt 296  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
5699888 gaaattaatttcttgtaatctttttgtatctcgttgatagtgaagtggagagatctctccccagagtatgttattgttggaccgaatcaagaaaatattt 5699789  T
297 cttgtgtgtttgtttcttttctcttctatcttatggttgctgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttgac 396  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5699788 cttgtgtgtttgtttcttttctcttttatcttatcgttgctgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttgac 5699689  T
397 ttgttgttgcttaaggttactttgatannnnnnngacaaaggttactttgatattgattactacttttctttgctccacacatttaagaatattggtatg 496  Q
    |||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||| |||||||||||||| |||||||| | ||||| ||||    
5699688 ttgttgttgcttaaggttactttgatatttttttgacaaaggttactttaatattgattactatttttctttgctccaaacatttaaaattattgatatg 5699589  T
497 attttgagtccaaatacacacctaaacacctccattatccaaatcgacaaaaaactaaaactattatcattccttcatcaaagatagctcaaataatgca 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
5699588 attttgagtccaaatacacacctaaacacctccattatccaaatcgac-taaaactaaaactattatcattccttcatcaaagatagctcaaataatgca 5699490  T
597 tgaaatcgattatcaaataatatcattactttcacatattgaacatattatctggtcctaccatgatttctaataatatttatcctatctatttatttat 696  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
5699489 tgaaatcaattatcaaataatatcattactttcacatattgaacacattatctggtcctaccatgatttctaataatatttatcctatctatctatttat 5699390  T
697 tgtg 700  Q
    ||||    
5699389 tgtg 5699386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 12324544 - 12324430
Alignment:
49 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 148  Q
    |||||||||||| |||  || |||||||||| ||||||  | || || ||||||||||||||| |||||||||| | ||| |||||||||| ||||||||    
12324544 tttatgcacaactcaaggttacttgattttaagatcacacgccacgtctccatttacctcaactaattatgttaggtcaaatgtatttcctcatatgcta 12324445  T
149 ttttgaatcataaca 163  Q
    |||||||||||||||    
12324444 ttttgaatcataaca 12324430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 8485881 - 8485966
Alignment:
74 attttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcat 159  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| | |||||||| ||||||||    
8485881 attttaagaccactagtcatgtgtccatttacctcaatcaattatgttatgccaaatgtatatcctcaaatgctattctgaatcat 8485966  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 31380618 - 31380499
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaacc--aattatgttatgccaagtgtatttcctaata 143  Q
    ||||||||||||||| |||  ||| ||||||||||||| | ||| || |||||||||||  ||||||  ||||||||||||| ||||||||||||  |||    
31380618 ctatttatgcacaactcaaggttcattgattttaggatgattagccacgtgtccatttatatcaaccccaattatgttatgctaagtgtatttccacata 31380519  T
144 tgctattttgaatcataaca 163  Q
    ||||| ||||||||||||||    
31380518 tgctactttgaatcataaca 31380499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 28770878 - 28770964
Alignment:
306 ttgtttcttttctcttctatcttatggttgctgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgt 392  Q
    ||||||| |||||||||| | ||||  ||  |||||||| || |||||||||||||||| |||||||||||||||||||||||||||    
28770878 ttgtttcctttctcttctttattatattttttgctttgattatgcttgtggtgttgcttcacacttagatctaggtctatttgttgt 28770964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 2869829 - 2869886
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||    
2869829 tgctttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttg 2869886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 3277965 - 3277908
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    ||||||||||| | |||| ||||||||| |||||||||||||| ||||||||||||||    
3277965 tgctttgaatatgtttgtagtgttgcttcacacttagatctagatctatttgttgttg 3277908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 12123477 - 12123434
Alignment:
436 aggttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
12123477 aggttactttgatattggttactactttcctttgctccacacat 12123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 8390284 - 8390330
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
8390284 tgctttgattatgcttgtggtgttgctctacacttagatctaggtct 8390330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 11151476 - 11151438
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||||||||||||| ||||||||||||||    
11151476 actttgatattgattactacttttatttgctccacacat 11151438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 23078606 - 23078663
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||||||||| ||||||||||||||||| | ||| ||||||    
23078606 tgctttgattatgcttgtggtgttgctctacacttagatctaggtatgttttttgttg 23078663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 14699129 - 14699198
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttgacttgttgttgctt 408  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||  || ||||||  ||||||||||||    
14699129 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctgctttttgttg--ttgttgttgctt 14699198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 17865165 - 17865121
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggt 381  Q
    |||||||| || ||||||||||||||| |||||||||||||||||    
17865165 tgctttgattatgcttgtggtgttgctctacacttagatctaggt 17865121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 29868154 - 29868194
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||||| | |||||||||||||||||||||||||||||||    
29868154 ttactttaaaattgattactacttttctttgctccacacat 29868194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 39285120 - 39285160
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
39285120 ttactttgaaattggttactacttttctttgctccacacat 39285160  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 4561352 - 4561411
Alignment:
435 aaggttactttgatattgattactacttttc-tttgctccacacatttaagaatattggt 493  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||| ||||  |||||||    
4561352 aaggttactttgatattggttactacttttcttttgttccacacatctaagtttattggt 4561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 723627 - 723589
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
723627 actttgatattggttactactttcctttgctccacacat 723589  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 5723136 - 5723098
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
5723136 actttgatattggttactactttactttgctccacacat 5723098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 6594884 - 6594846
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
6594884 actttgatattggttactactttactttgctccacacat 6594846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 8040022 - 8039976
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
8040022 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 8039976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 11067588 - 11067626
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
11067588 actttgatattggttactactttcctttgctccacacat 11067626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 11183936 - 11183882
Alignment:
109 aaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||||  || |||||||||||||| || ||||||||||| |||||||||||    
11183936 aaccaattacattttgccaagtgtattttctcatatgctatttagaatcataaca 11183882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 20522182 - 20522136
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||| ||||    
20522182 tgctttgattatgcttgtggtgttgctctacacttagatctatgtct 20522136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 31056004 - 31055958
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
31056004 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 31055958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 33528756 - 33528802
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||| ||||||||||||||    
33528756 tgctttgattatgcttgtggtgttgctctacatttagatctaggtct 33528802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 34139653 - 34139615
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
34139653 actttgatattggttactactttcctttgctccacacat 34139615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 34388809 - 34388775
Alignment:
349 gcttgtggtgttgctttacacttagatctaggtct 383  Q
    ||||||||||||||| |||||||||||||||||||    
34388809 gcttgtggtgttgctctacacttagatctaggtct 34388775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 38312528 - 38312566
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
38312528 actttgatattggttactactttcctttgctccacacat 38312566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 45100042 - 45100080
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
45100042 actttgatattggttactactttcctttgctccacacat 45100080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 10445579 - 10445636
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||| ||||| ||||||||||| ||||||| ||| ||||||    
10445579 tgctttgattatgcttgtggttttgctctacacttagatttaggtctgttttttgttg 10445636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 12632507 - 12632466
Alignment:
349 gcttgtggtgttgctttacacttagatctaggtctatttgtt 390  Q
    |||||||||||||||| ||||||| |||||||||| ||||||    
12632507 gcttgtggtgttgcttgacacttatatctaggtctgtttgtt 12632466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 13122044 - 13122085
Alignment:
438 gttactttgatattgattactacttttctttgctccacacat 479  Q
    |||| |||||||||||||| ||||||||||| ||||||||||    
13122044 gttattttgatattgattagtacttttctttactccacacat 13122085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 33162333 - 33162296
Alignment:
442 ctttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||| |||||||||| |||||||||||||||    
33162333 ctttgatattggttactactttcctttgctccacacat 33162296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 36191139 - 36191098
Alignment:
443 tttgatattgattactacttttctttgctccacacatttaag 484  Q
    |||||||||| |||||  ||||||||||||||||||||||||    
36191139 tttgatattggttactgattttctttgctccacacatttaag 36191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 34272361 - 34272244
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||||||||||||| | || | |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||| || |||||    
34272361 ctatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccatttacctaaaccaattatgttatgccaaatgtattttctcatatg 34272262  T
146 ctattttgaatcataaca 163  Q
    ||||||||||||||||||    
34272261 ctattttgaatcataaca 34272244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 15027014 - 15027130
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||| ||||||||||  ||  ||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| ||||||| || || ||    
15027014 ctatatatgcacaacttaaggttccttgattttaggatcactagccgagtgtc-atttacctcaaccaattatgttatgccaaatgtattttctcatgtg 15027112  T
146 ctattttgaatcataaca 163  Q
     ||||||| |||||||||    
15027113 ttattttggatcataaca 15027130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 420
Target Start/End: Complemental strand, 30899810 - 30899742
Alignment:
350 cttgtggtgttgctttacacttagatctaggtctatttgttgttgacttgttgttgcttaaggttactttg 420  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||  |||||||||||| ||| |||||||    
30899810 cttgtggtgttgcttaacactttgatctaggtctatgtgttgttg--ttgttgttgcttgaggctactttg 30899742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 3880262 - 3880216
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||||||||||||||| |||||||    
3880262 tgctttgattatgcttgtggtgttgctttacacttagatttaggtct 3880216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 12084311 - 12084357
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
12084311 tgctttgattatgcttgtggtgttgctctacacttagatctaggtct 12084357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 2630193 - 2630110
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg-acttgttgttgcttaaggttacttt 419  Q
    |||||| |||| ||||||||||||||| | ||||||||| |||| ||||||||| |||   |||||||||||| ||| ||||||    
2630193 tgctttaaatatgcttgtggtgttgctctgcacttagatttaggcctatttgtttttgttgttgttgttgcttgaggctacttt 2630110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 14520179 - 14520145
Alignment:
349 gcttgtggtgttgctttacacttagatctaggtct 383  Q
    ||||||||||||||| |||||||||||||||||||    
14520179 gcttgtggtgttgctctacacttagatctaggtct 14520145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 19588708 - 19588662
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
19588708 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 19588662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 30682803 - 30682765
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
30682803 actttgatattggttactactttcctttgctccacacat 30682765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 39468429 - 39468391
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
39468429 actttgatattggttactactttcctttgctccacacat 39468391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 42428311 - 42428273
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
42428311 actttgatattggttactactttcctttgctccacacat 42428273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 30793237 - 30793324
Alignment:
230 ttgatagtgaagtggagagatctct---ccccagagtatgttattgttggaccaaatcaagaaaatatttctt-gtgtgtttgtttct 313  Q
    |||||||||||||||||||||||||   ||| |||||| || ||||||||||| ||  | | ||| ||||||| ||||||||||||||    
30793237 ttgatagtgaagtggagagatctctctcccctagagtaagtcattgttggaccgaacaaggtaaacatttcttggtgtgtttgtttct 30793324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 34842554 - 34842509
Alignment:
349 gcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||||||||||| |||||||||||||||| | ||| ||||||    
34842554 gcttgtggtgttgcttcacacttagatctaggtttgtttattgttg 34842509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 6919437 - 6919321
Alignment:
49 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 148  Q
    ||||||||||| |||||||| ||| ||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||| |  ||||||||    
6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
149 ttttgaatcataacaaa 165  Q
    | |||||||||||||||    
6919337 tattgaatcataacaaa 6919321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 29181602 - 29181491
Alignment:
45 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 144  Q
    |||||||||||| | |||||||||| ||||||||||||||||||| ||  ||| ||||| ||||||||| | |||  |||||||||||||||| | ||||    
29181602 cctatttatgcatatcccaaacttctttgattttaggatcactagccacttgttcatttgcctcaaccagtaatgacatgccaagtgtatttcttcatat 29181503  T
145 gctattttgaat 156  Q
    ||||||||||||    
29181502 gctattttgaat 29181491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 22963662 - 22963605
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||| ||| ||||||    
22963662 tgctttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttgttg 22963605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 23824731 - 23824788
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||| ||| ||||||    
23824731 tgctttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttgttg 23824788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 5017603 - 5017649
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
5017603 tgctttgattatgcttgtggtgttgctctacacttagatctaggtct 5017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 8171206 - 8171134
Alignment:
66 cttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcct 139  Q
    ||||||||||||||| |||||||| ||  |||| |||| | ||||||||||| |||||| ||||||||||||||    
8171206 cttccttgattttag-atcactagccacatgtcaatttgcttcaaccaattaagttatgacaagtgtatttcct 8171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 10086146 - 10086065
Alignment:
82 atcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||| ||  |||||||||| ||||||||||||| || | | | |||||||| || || ||||||||||||||||||||    
10086146 atcactagccacatgtccatttatctcaaccaattatatttttcaatgtgtattttctcatgtgctattttgaatcataaca 10086065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 18232807 - 18232763
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggt 381  Q
    |||||||| || ||||||||||||||| |||||||||||||||||    
18232807 tgctttgattatgcttgtggtgttgctctacacttagatctaggt 18232763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 30063047 - 30062991
Alignment:
95 tgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattt 151  Q
    |||||||||||||||||||||||  || |||||||||||||| || || ||||||||    
30063047 tgtccatttacctcaaccaattacattttgccaagtgtattttctcatgtgctattt 30062991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 516
Target Start/End: Original strand, 4045693 - 4045772
Alignment:
438 gttactttgatattgattactacttttctttgctccacacatttaagaatattggtatg-attttgagtccaaatacaca 516  Q
    ||||||||||||||| ||||||||||  ||  || ||||||| ||||| ||||||| || ||||||||||||||| ||||    
4045693 gttactttgatattggttactactttctttaacttcacacatataagattattggtgtgaattttgagtccaaattcaca 4045772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 4629915 - 4629869
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
4629915 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 4629869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 5408950 - 5408912
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
5408950 actttgatattggttactactttcctttgctccacacat 5408912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 5413275 - 5413237
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
5413275 actttgatattggttactactttcctttgctccacacat 5413237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 9182911 - 9182873
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
9182911 actttgatattggttactactttcctttgctccacacat 9182873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 10077300 - 10077346
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
10077300 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 10077346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 28137293 - 28137255
Alignment:
439 ttactttgatattgattactacttttctttgctccacac 477  Q
    |||||||||||||| |||||||||| |||||||||||||    
28137293 ttactttgatattggttactactttcctttgctccacac 28137255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 449 - 499
Target Start/End: Original strand, 30519238 - 30519287
Alignment:
449 attgattactacttttctttgctccacacatttaagaatattggtatgatt 499  Q
    ||||||||||| |||||||||||||||||||||||   |||||||||||||    
30519238 attgattacta-ttttctttgctccacacatttaaatttattggtatgatt 30519287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 31404555 - 31404517
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||||| ||| |||||||||||||||    
31404555 actttgatattgattactattttcctttgctccacacat 31404517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 32471262 - 32471378
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||||||||||||| |||| |||||||||||||||||||||||   |  ||||||||| ||||||||||| || |||||||||| ||||||||| ||||     
32471262 ctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatatt 32471361  T
146 ctattttgaatcataac 162  Q
    |||||||||||||||||    
32471362 ctattttgaatcataac 32471378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 39773267 - 39773170
Alignment:
66 cttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||||| |||||||||||||||| ||  |||||||||  |||||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||    
39773267 cttccttaattttaggatcactagccacatgtccatttttctcaaccaattatgttatgccatgtgtaattccttatatgtcattttgaatcataaca 39773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 29367426 - 29367543
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    ||||||||| | |||||||| ||| || |||||||||| ||||| |  ||  |||||||| |||||||||||| |||| | ||||||||||||| ||||     
29367426 ctatttatgtataacccaaagttctttaattttaggattactagccgcgtacccatttacttcaaccaattatattatactaagtgtatttcctcatata 29367525  T
146 ctattttgaatcataaca 163  Q
     |||||||||||||||||    
29367526 ttattttgaatcataaca 29367543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 29991341 - 29991379
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| ||||||||||||||||||||||||||    
29991341 actttgatattggttactacttttctttgctccacacat 29991379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 31105282 - 31105242
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
31105282 ttactttgatattgattactactttcctttactccacacat 31105242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 503
Target Start/End: Complemental strand, 30843369 - 30843302
Alignment:
437 ggttactttgatattgattactacttttc-tttgctccacacatttaagaatattggtatgattttga 503  Q
    |||||||||||||||| |||||||||| | |||||||||||| | ||||  ||||||| |||||||||    
30843369 ggttactttgatattggttactactttccttttgctccacacttctaagtttattggtgtgattttga 30843302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 55910 - 55864
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| || ||||||||||||||||    
55910 tgctttgattatgcttgtggtgttgctctatacttagatctaggtct 55864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 4796802 - 4796848
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
4796802 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 4796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 8153625 - 8153659
Alignment:
441 actttgatattgattactacttttctttgctccac 475  Q
    ||||||||||||||||||||||| |||||||||||    
8153625 actttgatattgattactactttcctttgctccac 8153659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 18126934 - 18126972
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||||||||| |||| ||||||||||    
18126934 actttgatattgattactactttcctttactccacacat 18126972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 20284051 - 20284005
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
20284051 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 20284005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 479
Target Start/End: Original strand, 23344249 - 23344291
Alignment:
437 ggttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||| ||||||| |||||||||| |||||||||||||||    
23344249 ggttacttggatattggttactactttcctttgctccacacat 23344291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 23555329 - 23555367
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
23555329 actttgatattggttactactttcctttgctccacacat 23555367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 476
Target Start/End: Complemental strand, 24525385 - 24525351
Alignment:
442 ctttgatattgattactacttttctttgctccaca 476  Q
    |||||||||||||||||||||||||||||| ||||    
24525385 ctttgatattgattactacttttctttgctacaca 24525351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 25766837 - 25766799
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||| ||||| ||||||||||||||||||||||||||    
25766837 actttgttattggttactacttttctttgctccacacat 25766799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 29159765 - 29159719
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
29159765 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 29159719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 35854204 - 35854242
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
35854204 actttgatattggttactactttcctttgctccacacat 35854242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 47676017 - 47675979
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
47676017 actttgatattggttactactttcctttgctccacacat 47675979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 48489719 - 48489757
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
48489719 actttgatattggttactactttcctttgctccacacat 48489757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 49091624 - 49091578
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||| ||||||||||    
49091624 tgctttgattatgcttgtggtgttgctctacacttaaatctaggtct 49091578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 495870 - 495833
Alignment:
439 ttactttgatattgattactacttttctttgctccaca 476  Q
    |||||||||||||| |||||||||| ||||||||||||    
495870 ttactttgatattggttactactttcctttgctccaca 495833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 2647831 - 2647888
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||||||||| || |||||||| ||||||| ||| ||||||    
2647831 tgctttgattatgcttgtggtgttgctctaaacttagatttaggtctgttttttgttg 2647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 506
Target Start/End: Complemental strand, 23564953 - 23564884
Alignment:
437 ggttactttgatattgattactacttttctttgctccacacatttaagaatattggtatgattttgagtc 506  Q
    |||||||||||||||| | ||||||||||||  |||||||||| || |  |||| || ||||||||||||    
23564953 ggttactttgatattggtcactacttttcttcactccacacatctatgtttattagtgtgattttgagtc 23564884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 36146291 - 36146254
Alignment:
442 ctttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||| |||||||||| |||||||||||||||    
36146291 ctttgatattggttactactttcctttgctccacacat 36146254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 46516445 - 46516502
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || |||| |||||||||||||||||||||| || |||| ||| ||||||    
46516445 tgctttgattatgcttttggtgttgctttacacttagatttaagtctgttttttgttg 46516502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 32848074 - 32848192
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||||||||||||| |||||||||||||||||||||||||  || ||  ||| ||||||||||||||||| |||||||||||| |||| ||  | |||||    
32848074 ctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatttacctcaaccaatgatgttatgccaaatgtaattttttatatg 32848173  T
146 ctattttgaatcataacaa 164  Q
    | | |||||||||||||||    
32848174 caaatttgaatcataacaa 32848192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 9617997 - 9618111
Alignment:
49 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 148  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||  | ||| ||| ||||||||||||||| |||| ||| |||||||| | ||||||||    
9617997 tttatgcacaatccaaacttcattgattctaggatcactagccacatctccctttgcctcaaccaattatgatatgtcaaatgtatttcttcatatgcta 9618096  T
149 ttttgaatcataaca 163  Q
    ||||  |||||||||    
9618097 ttttagatcataaca 9618111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 17011727 - 17011821
Alignment:
67 ttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||||||||||||||||||||| || ||| |   ||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||||    
17011727 ttccttgattttaggatcactagccaagtgaca--ttacctcaaccaattatgttatgccaagtgtatcttctcatttgctattttggatcataaca 17011821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 17545474 - 17545380
Alignment:
67 ttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||||||||||||||||||||| || ||| |   ||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||||    
17545474 ttccttgattttaggatcactagccaagtgaca--ttacctcaaccaattatgttatgccaagtgtatcttctcatttgctattttggatcataaca 17545380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 39721287 - 39721403
Alignment:
47 tatttatgcacaacccaaacttccttgattttaggatcact--agtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 144  Q
    |||||||||||||| |||  || |||||||||| ||||| |  || ||||| |||||||||||| ||||||||| ||||| |||||||||||  | || |    
39721287 tatttatgcacaactcaagttttcttgattttaagatcattgtagccatgtatccatttacctcgaccaattatattatgtcaagtgtattttttcatgt 39721386  T
145 gctattttgaatcataa 161  Q
    |||||||||||||||||    
39721387 gctattttgaatcataa 39721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 5990699 - 5990753
Alignment:
340 tttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| ||||||||| ||| | ||||||||||| ||||||||||||||||||    
5990699 tttgaatatgcttgtggttttgttctacacttagatttaggtctatttgttgttg 5990753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 516
Target Start/End: Complemental strand, 32902073 - 32901992
Alignment:
436 aggttactttgatattgattactacttttcttt-gctccacacatttaagaatattggtatgattttgagtccaaatacaca 516  Q
    ||||| ||||||||||  ||||||||| ||||| ||||||||||| ||||  ||||||| ||||||||||||| ||| ||||    
32902073 aggttgctttgatattagttactacttctcttttgctccacacatctaagtttattggtctgattttgagtccgaattcaca 32901992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 1292351 - 1292311
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||||||||||||| |||||    
1292351 ttactttgatattgtttactacttttctttgctccccacat 1292311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 12702513 - 12702473
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||| |||||||||||||||    
12702513 ttactttgatattggttactactttcctttgctccacacat 12702473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 19491585 - 19491545
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||||||| |||||| |||||||||||||||    
19491585 ttactttgatattgattaatactttcctttgctccacacat 19491545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 41366500 - 41366460
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||| |||||||||||||||    
41366500 ttactttgatattggttactactttcctttgctccacacat 41366460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 7493210 - 7493253
Alignment:
351 ttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||    
7493210 ttgtggtgttgctctacacttagatttagatctatttgttgttg 7493253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 479
Target Start/End: Original strand, 8154064 - 8154106
Alignment:
437 ggttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||||||||||||| |||| || |||||||    
8154064 ggttactttgatattgattactactttcctttacttcacacat 8154106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 15213074 - 15213112
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
15213074 actttgatattggttactactttcctttgctccacacat 15213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 26403365 - 26403411
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
26403365 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 26403411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 30143628 - 30143666
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
30143628 actttgatattggttactactttcctttgctccacacat 30143666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 34254211 - 34254173
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
34254211 actttgatattggttactactttcctttgctccacacat 34254173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 1345258 - 1345221
Alignment:
439 ttactttgatattgattactacttttctttgctccaca 476  Q
    |||||||||||||| |||||||||| ||||||||||||    
1345258 ttactttgatattggttactactttcctttgctccaca 1345221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 5689556 - 5689593
Alignment:
442 ctttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||| |||||||||| |||||||||||||||    
5689556 ctttgatattggttactactttcctttgctccacacat 5689593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 516
Target Start/End: Complemental strand, 11711889 - 11711808
Alignment:
436 aggttactttgatattgattactacttttcttt-gctccacacatttaagaatattggtatgattttgagtccaaatacaca 516  Q
    |||||||||| || ||| |||||||||| |||| ||||||||||| ||||  ||||||| | ||||||||||| ||| ||||    
11711889 aggttacttttatcttggttactactttccttttgctccacacatctaagtttattggtgtaattttgagtccgaattcaca 11711808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 40321361 - 40321398
Alignment:
439 ttactttgatattgattactacttttctttgctccaca 476  Q
    ||||||||||||||||| ||||||| ||||||||||||    
40321361 ttactttgatattgattgctactttcctttgctccaca 40321398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 45610659 - 45610535
Alignment:
45 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 144  Q
    ||||||||||||||||| || |||||||||| |||| ||||||||| |  |||| |||| ||||||| |||||| |||||||||||||| || ||  |||    
45610659 cctatttatgcacaaccaaaccttccttgatcttagaatcactagttacatgtctatttgcctcaacaaattatattatgccaagtgtaattacttctat 45610560  T
145 g-ctattttgaatcataacaaaaga 168  Q
    | | | |||||||||||||||||||    
45610559 gtccaatttgaatcataacaaaaga 45610535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 37781825 - 37781771
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttg 391  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
37781825 tgctttgaatatgcttgtggtgttgcttcacacttagatctaggtctatttgttg 37781771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 5842125 - 5842204
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgc 125  Q
    ||||||||| |||| | |||||||||| ||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||    
5842125 ctatttatgtacaatctaaacttccttcattttagtatcaatagtcatgtgcccatttacctcaatcaaatatgtgatgc 5842204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 5198896 - 5198982
Alignment:
50 ttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtattt 136  Q
    ||||||| || |||| ||||| |||||||   |||||||| ||  ||||||||| |||||||||||||||||||||| |||||||||    
5198896 ttatgcataatccaagcttccatgattttttaatcactagccacatgtccatttgcctcaaccaattatgttatgccgagtgtattt 5198982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 5269326 - 5269394
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttgacttgttgttgctt 408  Q
    |||||||| || ||||||||||||||| ||||||||||||||||| ||||| ||||||  ||||||||||||    
5269326 tgctttgattatgcttgtggtgttgctctacacttagatctaggtatattt-ttgttg--ttgttgttgctt 5269394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 10047341 - 10047291
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctattt 387  Q
    |||||||| || ||||||||||||||| |||||||||||||| ||||||||    
10047341 tgctttgattatgcttgtggtgttgctctacacttagatctatgtctattt 10047291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 16630817 - 16630859
Alignment:
339 ctttgaataagcttgtggtgttgctttacacttagatctaggt 381  Q
    |||||| || |||||||||||||||||||||||||||||||||    
16630817 ctttgattatgcttgtggtgttgctttacacttagatctaggt 16630859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 38152573 - 38152619
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
38152573 tgctttgattatgcttgtggtgttgctatacacttagatctaggtct 38152619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 23406586 - 23406518
Alignment:
95 tgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||| ||||| ||||||||||||  || | |||||||||||| || || ||||||||||||||||||||    
23406586 tgtctatttagctcaaccaattacatttttccaagtgtattttctcatgtgctattttgaatcataaca 23406518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 48893525 - 48893485
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||| |||||||||||||||    
48893525 ttactttgatattggttactactttcctttgctccacacat 48893485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 4848810 - 4848723
Alignment:
50 ttatgcacaacccaaacttccttgattttagga-tcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtattt 136  Q
    ||||||| || |||| |||||||||||||   | ||||||| ||  ||||||||| | |||||||||||||||||||||| |||||||    
4848810 ttatgcataatccaagcttccttgatttttttaatcactagccacatgtccatttgcgtcaaccaattatgttatgccaaatgtattt 4848723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 478
Target Start/End: Complemental strand, 5207735 - 5207693
Alignment:
436 aggttactttgatattgattactacttttctttgctccacaca 478  Q
    |||||||||||||||  ||||||||||| ||||||||||||||    
5207735 aggttactttgatatcaattactactttcctttgctccacaca 5207693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 5369962 - 5369924
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||||||||| |||| ||||||||||    
5369962 actttgatattgattactactttcctttactccacacat 5369924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 5872105 - 5872143
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
5872105 actttgatattggttactactttcctttgctccacacat 5872143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 25862157 - 25862203
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
25862157 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 25862203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 29999709 - 29999671
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
29999709 actttgatattggttactactttcctttgctccacacat 29999671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 37740913 - 37740951
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||||||||||||||| || ||||||||||||    
37740913 actttgatattgattactactttcctgtgctccacacat 37740951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 46147276 - 46147238
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
46147276 actttgatattggttactactttcctttgctccacacat 46147238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 48143336 - 48143374
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
48143336 actttgatattggttactactttcctttgctccacacat 48143374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 56178516 - 56178478
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
56178516 actttgatattggttactactttcctttgctccacacat 56178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 42599709 - 42599762
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgtt 390  Q
    |||||||| || ||||||||||||||| |||| |||||||||||| | ||||||    
42599709 tgctttgattatgcttgtggtgttgctctacatttagatctaggtttgtttgtt 42599762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 29274555 - 29274471
Alignment:
78 taggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||||| | ||  |||||||||  ||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||    
29274555 taggatcactggccacatgtccatttgtctcaaccaaatatgttatgccaagtgtatttccttata-gatattttgaatcataaca 29274471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 437 - 516
Target Start/End: Complemental strand, 37282581 - 37282501
Alignment:
437 ggttactttgatattgattactacttttcttt-gctccacacatttaagaatattggtatgattttgagtccaaatacaca 516  Q
    ||||||||| ||||| |||| ||||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||| ||||    
37282581 ggttactttcatattaattattacttttcttttgctccacacatttaagtttattggtgtgattttgagtccgaattcaca 37282501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 47704071 - 47704128
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| ||| |||||||||||||| ||||||||||| ||||||||||| ||||||    
47704071 tgctttgattaaacttgtggtgttgctctacacttagatttaggtctattttttgttg 47704128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 23555153 - 23555113
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||| |||||||||||||||||||||||||||||||    
23555153 ttactttgacattgattactacttttctttgctccacacat 23555113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 32897322 - 32897267
Alignment:
105 cctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcata 160  Q
    |||||||||||| ||||||||||||||||||| || ||||  ||||||||||||||    
32897322 cctcaaccaattctgttatgccaagtgtattttctcatatagtattttgaatcata 32897267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 10925510 - 10925547
Alignment:
441 actttgatattgattactacttttctttgctccacaca 478  Q
    ||||||||||||||||||||||| ||||||||||||||    
10925510 actttgatattgattactactttcctttgctccacaca 10925547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 29651773 - 29651716
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||||||||| |||||||||||||| |||| ||| ||||||    
29651773 tgctttgattatgcttgtggtgttgctctacacttagatctaagtctgttttttgttg 29651716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 834052 - 834012
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||| |||||||||||||||    
834052 ttactttgatattggttactactttcctttgctccacacat 834012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 41361196 - 41361236
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||||||| |||||| |||||||||||||||    
41361196 ttactttgatattgattaatactttcctttgctccacacat 41361236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 48382631 - 48382667
Alignment:
351 ttgtggtgttgctttacacttagatctaggtctattt 387  Q
    |||||||||||||| ||||||||||||||||||||||    
48382631 ttgtggtgttgcttcacacttagatctaggtctattt 48382667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 50167062 - 50167022
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||| |||||||||||||||    
50167062 ttactttgatattggttactactttcctttgctccacacat 50167022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 12900776 - 12900713
Alignment:
100 atttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||| ||||||||||||  || |||||||||||||| || || |||||| |||||||||||||    
12900776 atttagctcaaccaattacattttgccaagtgtattttctcatgtgctatcttgaatcataaca 12900713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 13316232 - 13316193
Alignment:
441 actttgatattgattactacttttctttgctccacacatt 480  Q
    |||||| |||||||||||||||| ||||||||||||||||    
13316232 actttgttattgattactactttcctttgctccacacatt 13316193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 13400079 - 13399978
Alignment:
63 aaacttccttgattttaggatcactagtcat---gtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcat 159  Q
    ||||||||||||||||| | | ||||| |||   || || ||||| ||||| |||||||||||| |||| |||| || || | |||||||||||||||||    
13400079 aaacttccttgattttatgtttactagccatatagtatcgatttatctcaaacaattatgttataccaaatgtactttcttaaatgctattttgaatcat 13399980  T
160 aa 161  Q
    ||    
13399979 aa 13399978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 775634 - 775588
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
775634 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 775588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 3157153 - 3157191
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
3157153 actttgatattggttactactttcctttgctccacacat 3157191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 8550664 - 8550626
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
8550664 actttgatattggttactactttcctttgctccacacat 8550626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 13598360 - 13598314
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || |||||||||||| || |||||||||||||||||||    
13598360 tgctttgattatgcttgtggtgtttctctacacttagatctaggtct 13598314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 493
Target Start/End: Original strand, 15820582 - 15820636
Alignment:
439 ttactttgatattgattactacttttctttgctccacacatttaagaatattggt 493  Q
    |||||||||||||  |||||||||| ||||||||||||||| ||||  |||||||    
15820582 ttactttgatattagttactactttcctttgctccacacatctaagtttattggt 15820636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 27104507 - 27104553
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
27104507 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 27104553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 501
Target Start/End: Complemental strand, 44650046 - 44649992
Alignment:
447 atattgattactacttttctttgctccacacatttaagaatattggtatgatttt 501  Q
    |||||| |||||||||||||||||| ||||||| ||||  |||||| ||||||||    
44650046 atattggttactacttttctttgctacacacatctaagtttattggaatgatttt 44649992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 49138177 - 49138095
Alignment:
45 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgcca 127  Q
    |||||||||| |||| |||| ||||||| |||||||||| | |||  |  |||| |||| |||| ||||||||||||||||||    
49138177 cctatttatgtacaatccaagcttcctttattttaggatgaatagctacatgtcaatttgcctcgaccaattatgttatgcca 49138095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 49918638 - 49918676
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
49918638 actttgatattggttactactttcctttgctccacacat 49918676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 4625329 - 4625300
Alignment:
95 tgtccatttacctcaaccaattatgttatg 124  Q
    ||||||||||||||||||||||||||||||    
4625329 tgtccatttacctcaaccaattatgttatg 4625300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 13659233 - 13659192
Alignment:
439 ttactttgatattgattactacttttctttgctccacacatt 480  Q
    |||||||||| ||| |||||||||| ||||||||||||||||    
13659233 ttactttgatgttggttactactttcctttgctccacacatt 13659192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 40816867 - 40816924
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||| ||||||||||| ||||||||||| ||||||| ||| ||||||    
40816867 tgctttgattatgctcgtggtgttgctctacacttagatttaggtctgttttttgttg 40816924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 45644237 - 45644200
Alignment:
442 ctttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||| |||||||||| |||||||||||||||    
45644237 ctttgatattggttactactttcctttgctccacacat 45644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 516
Target Start/End: Complemental strand, 27305600 - 27305522
Alignment:
438 gttactttgatattgattactacttttctttgctccacacatttaagaatattggtatgattttgagtccaaatacaca 516  Q
    ||||||||||||||| |||||||||| |||||||||||||||   ||  ||||||| ||||||||||||| ||| ||||    
27305600 gttactttgatattggttactactttcctttgctccacacatcatagtttattggtgtgattttgagtccgaattcaca 27305522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 46506003 - 46505886
Alignment:
46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacct-caaccaattatgttatgccaagtgtatttcctaatat 144  Q
    ||||||||||||| || ||  |||||| ||||||||||||| || |||||||||||| |  | |||| ||| || ||||||||||||| |||||| | ||    
46506003 ctatttatgcacatcc-aaggttcctttattttaggatcaccagacatgtgtccattcaatttcaactaataatattatgccaagtgtgtttcctcaaat 46505905  T
145 gctattttgaatcataaca 163  Q
    ||||| |||||||||||||    
46505904 gctatattgaatcataaca 46505886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 14594845 - 14594910
Alignment:
98 ccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||| |||||||||| |||||| |||||| |||||  | |||||||||||||||||||||||    
14594845 ccatttacttcaaccaattctgttatcccaagtctattttttcatatgctattttgaatcataaca 14594910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 8370612 - 8370658
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
8370612 tgctttgattatgcttgtggtgttgctctacacttagatctaggtct 8370658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 27026907 - 27026861
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||    
27026907 tgctttgattatgcttgtggtgttgctctacacttagatctaggtct 27026861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 22834889 - 22834849
Alignment:
439 ttactttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||||| |||||||||| |||||||||||||||    
22834889 ttactttgatattggttactactttcctttgctccacacat 22834849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 35925441 - 35925398
Alignment:
340 tttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
35925441 tttgattatgcttgtggtgttgctctacacttagatctaggtct 35925398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 474
Target Start/End: Complemental strand, 44700366 - 44700331
Alignment:
439 ttactttgatattgattactacttttctttgctcca 474  Q
    |||||||||||||| |||||||||||||||||||||    
44700366 ttactttgatattggttactacttttctttgctcca 44700331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 48438173 - 48438130
Alignment:
340 tttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
48438173 tttgattatgcttgtggtgttgctctacacttagatctaggtct 48438130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 479
Target Start/End: Complemental strand, 2074966 - 2074924
Alignment:
437 ggttactttgatattgattactacttttctttgctccacacat 479  Q
    ||||| |||||||||| |||||||||| |||||||||||||||    
2074966 ggttattttgatattggttactactttcctttgctccacacat 2074924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 7762554 - 7762592
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
7762554 actttgatattggttactactttcctttgctccacacat 7762592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 9636004 - 9635966
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
9636004 actttgatattggttactactttcctttgctccacacat 9635966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 26298950 - 26298904
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
26298950 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 26298904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 27038252 - 27038210
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctag 379  Q
    |||||||| || ||||||||||||||| |||||||||||||||    
27038252 tgctttgattatgcttgtggtgttgctctacacttagatctag 27038210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 29813349 - 29813387
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||  ||||||||||||||||||||||||||    
29813349 actttgatattagttactacttttctttgctccacacat 29813387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 40592908 - 40592954
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||    
40592908 tgctttgattatgcttgtggtgttgctctacacttagatttaggtct 40592954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 40734785 - 40734823
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
40734785 actttgatattggttactactttcctttgctccacacat 40734823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 40735670 - 40735708
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    |||||||||||| |||||||||| |||||||||||||||    
40735670 actttgatattggttactactttcctttgctccacacat 40735708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 47924009 - 47924043
Alignment:
349 gcttgtggtgttgctttacacttagatctaggtct 383  Q
    ||||||||||||||| |||||||||||||||||||    
47924009 gcttgtggtgttgctctacacttagatctaggtct 47924043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Original strand, 16499300 - 16499341
Alignment:
439 ttactttgatattgattactacttttctttgctccacacatt 480  Q
    |||||||||| ||| |||||||||| ||||||||||||||||    
16499300 ttactttgatgttggttactactttcctttgctccacacatt 16499341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 29196269 - 29196232
Alignment:
442 ctttgatattgattactacttttctttgctccacacat 479  Q
    ||||||||||| |||||||||| |||||||||||||||    
29196269 ctttgatattggttactactttcctttgctccacacat 29196232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 40519156 - 40519107
Alignment:
436 aggttactttgatattgattactactt-ttctttgctccacacatttaag 484  Q
    ||||||||||||||||||||| |||||  | |||||||||||||||||||    
40519156 aggttactttgatattgattattacttcctttttgctccacacatttaag 40519107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 41975 - 41910
Alignment:
98 ccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||| |||||||||| |||||| |||||| |||||  | |||||||||||||||||||||||    
41975 ccatttacttcaaccaattctgttatcccaagtctattttttcatatgctattttgaatcataaca 41910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 10691 - 10634
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    |||||||| || ||||||||||||||| ||||||||||| ||||||| ||| ||||||    
10691 tgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttttttgttg 10634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 16124 - 16181
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 394  Q
    ||||||||||| | ||||||||||| || ||||||||||||||||  |||||||||||    
16124 tgctttgaatatgtttgtggtgttgtttcacacttagatctaggtaaatttgttgttg 16181  T

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Target: scaffold1668 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 1382 - 1344
Alignment:
441 actttgatattgattactacttttctttgctccacacat 479  Q
    ||||| ||||||||||||||||| |||||||||||||||    
1382 actttaatattgattactactttcctttgctccacacat 1344  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 2454 - 2408
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || ||||||||||||| | |||||||||||||||||||    
2454 tgctttgattatgcttgtggtgttgttctacacttagatctaggtct 2408  T

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Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 5645 - 5599
Alignment:
337 tgctttgaataagcttgtggtgttgctttacacttagatctaggtct 383  Q
    |||||||| || |||||||||||| || |||||||||||||||||||    
5645 tgctttgattatgcttgtggtgtttctctacacttagatctaggtct 5599  T

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Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 148994 - 148953
Alignment:
439 ttactttgatattgattactacttttctttgctccacacatt 480  Q
    |||||||||| ||| |||||||||| ||||||||||||||||    
148994 ttactttgatgttggttactactttcctttgctccacacatt 148953  T

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