View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_low_60 (Length: 396)
Name: NF11278_low_60
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_60 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 39874970 - 39875341
Alignment:
| Q |
6 |
atattattatgtttatattactcactaaatgaacttaactttttctatcatatccctaacagtaacacctcaaatgaaagtgtaaaaagtctttttcata |
105 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39874970 |
atattattatgtttatattactcactgaatgaacttaactttttctatcatatccctaaca------cctcaaatgaaagtgtaaa--gtctttttcata |
39875061 |
T |
|
| Q |
106 |
gtaaatggcatgaaaccccattttagtttttctagtttgccaaaggtggagcaatggggttcatgcaaaacctagcccgcctacaacctaatctaataga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39875062 |
gtaaatggcatgaaaccccattttagtttttctagtttgccaaaggtggagcaatggggttcatgcaaaacctagcccgcctacaacctaatctaatgga |
39875161 |
T |
|
| Q |
206 |
aaaagaaataaaaatacaaagccataaaattagctgtataagttggcatgattagcacggtacctctaaatta--ttttggggttacaagtagaaaatta |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39875162 |
aaaagaaataaaaatacaaagccataaaattagctgtataagttggcatgattagcacggtacctctaaattattttttggggttacaagtagaaaatta |
39875261 |
T |
|
| Q |
304 |
cctttaatcccttaatcagccaaagcttttgaaattataatgagttccacgatgactttattgatattgattctttctct |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
39875262 |
cctttaatcccttaatcagccaaagcttttgaaattatattgagttccacgatgacatccttgatattgattctttctct |
39875341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 166 - 383
Target Start/End: Original strand, 39883258 - 39883463
Alignment:
| Q |
166 |
tcatgcaaaacctagcccgcctacaacctaatctaatagaaaaagaaataaaaatacaaagccataaaattagctgtataagttggcatgattagcacgg |
265 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
39883258 |
tcatgcaaaagctagcccccctactacctaatctaatagaaaat-aaataaaaatacaaaaccataaaattagc-------------atgagtagcacgg |
39883343 |
T |
|
| Q |
266 |
tacctctaaat--tattttggggttacaagtagaaaattacctttaatcccttaatcagccaaagcttttgaaattataatgagttccacgatgacttta |
363 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
39883344 |
tacctctaaatattgttttggggttacaagtaaaaaattacctttaatcgcttaatcagccaaagcttttgaaattatattgagttccgcaatgactgcc |
39883443 |
T |
|
| Q |
364 |
ttgatattgattctttctct |
383 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
39883444 |
ttgatattggttctttctct |
39883463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 191 - 383
Target Start/End: Original strand, 39898284 - 39898476
Alignment:
| Q |
191 |
acctaatctaatagaaaaagaaataaaaatacaaagccataaaattagctgtataagttggcatgattagcacggtacctctaaat--tattttggggtt |
288 |
Q |
| |
|
|||||||||||| | |||| |||| | |||| ||| |||||||||| | ||||||||||||||||| |||||||| |||||||||| |||||||| ||| |
|
|
| T |
39898284 |
acctaatctaatggcaaaataaattagaataaaaaaccataaaattggttgtataagttggcatgagtagcacggaacctctaaatattattttggtgtt |
39898383 |
T |
|
| Q |
289 |
acaagtagaaaattacctttaatcccttaatcagccaaagcttttgaaattataatgagttccacgatgactttattgatattgattctttctct |
383 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||||||| || | |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
39898384 |
acaagtagaaaaatacctttactc--ttaatcagccaaagcttttgaaattttattaagttccgcgatgacttccttgatattgattctttctct |
39898476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 39890276 - 39890318
Alignment:
| Q |
209 |
agaaataaaaatacaaagccataaaattagctgtataagttgg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39890276 |
agaaataaaaatacaaagccataaaattagttgtataagttgg |
39890318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 39890321 - 39890371
Alignment:
| Q |
288 |
tacaagtagaaaattacctttaatcccttaatcagccaaagcttttgaaat |
338 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
39890321 |
tacaagtagaaaattaccttatttcccttcatcagccaaagcttttgaaat |
39890371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University