View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_61 (Length: 394)
Name: NF11278_low_61
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 27046074 - 27046442
Alignment:
| Q |
11 |
cacagaaggctcacttcttccttttgcaagttcaataattgcattgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattcca |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046074 |
cacagaaggctcacttcttccttttacaagttcaataattgctttgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattcca |
27046173 |
T |
|
| Q |
111 |
attgtgaaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046174 |
attgtgaaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatat |
27046273 |
T |
|
| Q |
211 |
ctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
27046274 |
ctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgcaccaccaacaccaaactc |
27046373 |
T |
|
| Q |
311 |
gactctaagtcttccgtctccggcatgtctcactattctacctgggaaacggattgagaagttggttta |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27046374 |
gactctaagtcttccgtctccggcatgtctcactattctacctgggaaacggattgagaagttggttta |
27046442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 27086140 - 27086501
Alignment:
| Q |
18 |
ggctcacttcttccttttgcaagttcaataattgcattgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattccaattgtga |
117 |
Q |
| |
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|||||| |||||||| |||||||||||| |||||| |||||| ||| || ||| |||| ||||||| | |||| || |||||||||||||||||| |
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|
| T |
27086140 |
ggctcagttcttcctcttgcaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattgtga |
27086239 |
T |
|
| Q |
118 |
aaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtc |
217 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || |||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
27086240 |
aaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgtgtc |
27086339 |
T |
|
| Q |
218 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactcta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |
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| T |
27086340 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcgactcta |
27086439 |
T |
|
| Q |
318 |
agtcttccgtctccggcatgtctcactattctacctgggaaacggattgagaagttggttta |
379 |
Q |
| |
|
||||||||||| || |||||| |||||| ||||||||||||| ||| ||||||||||||||| |
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|
| T |
27086440 |
agtcttccgtcaccagcatgtttcactagtctacctgggaaatggagtgagaagttggttta |
27086501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 27041662 - 27042023
Alignment:
| Q |
18 |
ggctcacttcttccttttgcaagttcaataattgcattgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattccaattgtga |
117 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||| |||||| ||| || ||| |||| ||||||| | |||| || |||||||||||||||||| |
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|
| T |
27041662 |
ggctcagttcttccacttccaagttcaacaattgctctgaagatttgtgatgcgccaaatccgtcacaaatagcatgcgacaaccccattccaattgtga |
27041761 |
T |
|
| Q |
118 |
aaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtc |
217 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || |||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
27041762 |
aaccgccacaaagaaattttgtcaccattaacaccaaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgtgtc |
27041861 |
T |
|
| Q |
218 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactcta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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|
| T |
27041862 |
agtattgtccaagtaatgaagagaagaaagggtgcaattagcatatgcttctaagaatggaacaccatattctgcaccacctagaccaaactcgactcta |
27041961 |
T |
|
| Q |
318 |
agtcttccgtctccggcatgtctcactattctacctgggaaacggattgagaagttggttta |
379 |
Q |
| |
|
|||||||| || || |||||| |||||| ||||||||||||||| | ||||| ||||||||| |
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|
| T |
27041962 |
agtcttccatcaccagcatgtttcactagtctacctgggaaacgcagtgagatgttggttta |
27042023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 27063018 - 27063283
Alignment:
| Q |
25 |
ttcttccttttgcaagttcaataattgcattgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattccaattgtgaaaccacc |
124 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||| ||| || ||| |||| ||||||| | ||||||| |||||||||||||||||||||||| |
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|
| T |
27063018 |
ttcttcctcttgcaagttcaagaattgctttgaagaattgtgatgcgccaaatccgtcacaaatagcatgtgacatccccattccaattgtgaaaccacc |
27063117 |
T |
|
| Q |
125 |
acaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattg |
224 |
Q |
| |
|
||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||| |
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|
| T |
27063118 |
acaaagaaatttcgtcaccattaacaccaaagggtaatttttatcttgaggagaaggaagatcaagcaccaaatgttttgcaatttctgtgttagtattg |
27063217 |
T |
|
| Q |
225 |
tccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattct |
290 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||| ||||| |
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|
| T |
27063218 |
tccaggtaatgaagagaagaaagtgtgcagttagcagttgcttccaagaacggaacgccaaattct |
27063283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 27070077 - 27070360
Alignment:
| Q |
11 |
cacagaaggctcacttcttccttttgcaagttcaataattgcattgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattcca |
110 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| || ||| ||||||| ||| || |||| |||| ||||||| | ||||||| |||||||||| |
|
|
| T |
27070077 |
cacagatggctcagttcttcctcttgcaagttcaacaactgctttgaagaattgtgatgcaccaaatccgtcacaaatagcatgtgacatccccattcca |
27070176 |
T |
|
| Q |
111 |
attgtgaaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatat |
210 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||||||| | ||||||||| | |
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|
| T |
27070177 |
attgtgaaaccaccacagagaaattttgtcaccattaacaccaaagggtaatttttatcctgaggagtaggaaaatcaagcaccaaatgttttgcaattt |
27070276 |
T |
|
| Q |
211 |
ctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgcac |
294 |
Q |
| |
|
| |||| ||||||||||| ||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| ||||||||| |
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|
| T |
27070277 |
cagtgttagtattgtccaggtaatgaagggaagaaagtgtgcagttagcagttgcttccaagaacggaacgccaaattctgcac |
27070360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 101 - 286
Target Start/End: Original strand, 27098889 - 27099065
Alignment:
| Q |
101 |
ccccattccaattgtgaaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtct |
200 |
Q |
| |
|
||||||||| || |||||||| ||||||| ||||||||||||| |||| |||||||||||| ||| |||| ||| ||||||||||| | | |
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|
| T |
27098889 |
ccccattccgatcgtgaaacctccacaaagaaattttgtcaccttgaacaccaaagggtaagctttctcttcggga---------tcaagcaccaaatgt |
27098979 |
T |
|
| Q |
201 |
tttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccata |
286 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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|
| T |
27098980 |
tttgcaatttctgtgtcggtattgtccaagtaattaatagaagaaagggtgcagttagcaattgcttccaagaatggaacaccata |
27099065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 101 - 286
Target Start/End: Original strand, 27105888 - 27106064
Alignment:
| Q |
101 |
ccccattccaattgtgaaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtct |
200 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||| |||| |||||||||||| |||| |||| |||| | |||||||| | | |
|
|
| T |
27105888 |
ccccattccgattgtgaaacctccacaacgaaattttgtcaccttgaacaccaaagggtaagttttgtcttcagga---------ttaagcaccagttgt |
27105978 |
T |
|
| Q |
201 |
tttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccata |
286 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
27105979 |
tttgcaatttctgtgtcggtattgtccaagtaattaatagaagaaagggtgcagttagcacttgcttccaagaatggaacaccata |
27106064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 19414813 - 19415089
Alignment:
| Q |
17 |
aggctcacttcttccttttgcaagttcaataattgcattgaagacttgaattgaaccatatccatcacaaacaacatgtgaacaccccattccaattgtg |
116 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||| | |||| || |||| ||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
19414813 |
aggctcatttcttccttttgcaatttcaacaattgcattgaaaaattgagatgcaccaaatccatcacaaacggcatgtgacaaccccattccaatggtt |
19414912 |
T |
|
| Q |
117 |
aaaccaccacaaataaattttgtcaccatgaataccaaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgt |
216 |
Q |
| |
|
| |||||||||||||||| ||| ||||| | ||||| |||||| ||||||||||| |||||| ||||| |||||| | |||||| | ||||||| |
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|
| T |
19414913 |
atgccaccacaaataaattgtgttaccattaccaccaatgggtaacacttatcttgaggggaaggaggatcaaacaccaattgttttgccacttctgtgt |
19415012 |
T |
|
| Q |
217 |
cagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccatattctgca |
293 |
Q |
| |
|
| | |||||||||||||| ||||||| |||| |||| |||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
19415013 |
ctgcattgtccaagtaattaagagaatcaaggctgcagttagcagttgcttccaagaatggaactccaaattctgca |
19415089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 20064990 - 20065076
Alignment:
| Q |
71 |
accatatccatcacaaacaacatgtgaacaccccattccaattgtgaaaccaccacaaataaattttgtcaccatgaataccaaagg |
157 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
20064990 |
accataaccatcacaaacactatgtgacaatcccattccaattgtgaaaccaccacaaagaaactttgtcaccttgaaaaccaaagg |
20065076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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