View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_63 (Length: 392)

Name: NF11278_low_63
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_63
NF11278_low_63
[»] chr3 (6 HSPs)
chr3 (1-392)||(42834325-42834716)
chr3 (33-129)||(42843082-42843178)
chr3 (39-157)||(42819167-42819285)
chr3 (219-267)||(42819413-42819461)
chr3 (135-203)||(42843301-42843369)
chr3 (328-392)||(42843524-42843588)
[»] chr8 (2 HSPs)
chr8 (32-192)||(12627732-12627892)
chr8 (39-195)||(12621861-12622017)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 42834325 - 42834716
Alignment:
Q  1 gaagttatgatgatttgatcnnnnnnnttattgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagtt 100  Q
    ||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42834325 gaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagtt 42834424  T
Q  101 gaaggtccaagttgggaatggtgagggtcaactagataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42834425 gaaggtccaagttgggaatggtgagggtcaactagataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaa 42834524  T
Q  201 gaatttaatttgaaagacgaggagttgcaaaaacaaactgctaaattgagtactcatattccagagtatattccagagtatgtctccaacattacaaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42834525 gaatttaatttgaaagacgaggagttgcaaaaacaaactgctaaattgagtactcatattccagagtatattccagagtatgtctccaacattacaaatt 42834624  T
Q  301 tggtaaaacaacttgagatagccagcaaaaagctcaagatatcaaaagttgaaattgaatctttaagaaatgaactgcggagtaagtcacat 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42834625 tggtaaaacaacttgaggtagccagcaaaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacat 42834716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 42843082 - 42843178
Alignment:
Q  33 gaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtc 129  Q
    |||| |||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||| ||||||| || | |||||||||    
T  42843082 gaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtc 42843178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 42819167 - 42819285
Alignment:
Q  39 gaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtcaactagata 138  Q
    |||||||||||||| |||||||||| |||||||| |||||| ||| |||||  ||| || |||||||| ||||||| |||  |  |||||||  | ||||    
T  42819167 gaggaagagctaagagttaccaatttaaagcttcaactttcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgata 42819266  T
Q  139 atgtgagcgaagaattgaa 157  Q
    ||||| | |||||||||||    
T  42819267 atgtgtgtgaagaattgaa 42819285  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 42819413 - 42819461
Alignment:
Q  219 gaggagttgcaaaaacaaactgctaaattgagtactcatattccagagt 267  Q
    |||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  42819413 gaggagttgcaaaaacaaactgctgaattggatactcatatttcagagt 42819461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 42843301 - 42843369
Alignment:
Q  135 gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa 203  Q
    |||||||||||| |||||||||| || ||| |||| |||||||  |||||||| ||||||||| |||||    
T  42843301 gataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaa 42843369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 42843524 - 42843588
Alignment:
Q  328 aaaagctcaagatatcaaaagttgaaattgaatctttaagaaatgaactgcggagtaagtcacat 392  Q
    ||||||||||||||||| ||| ||||||||||| |||||  || |||||   |||||||||||||    
T  42843524 aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacat 42843588  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 12627732 - 12627892
Alignment:
Q  32 tgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtcaa 131  Q
    ||||| |||||||||||||||  || ||||||  || |||| ||||||| || |||| | |||||||||||||||  || ||| |||| |||||||| |     
T  12627732 tgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaaaacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgag 12627831  T
Q  132 ctagataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagc 192  Q
    || ||||||||| |||||||| |||| || ||| || ||||| || | |||| ||||||||    
T  12627832 cttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagc 12627892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 12621861 - 12622017
Alignment:
Q  39 gaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttgggaatggtgagggtcaactagata 138  Q
    |||||||||||||| ||| | ||||  || ||||  ||||| ||| |||||| |||||||||||| || |||| || |||| |  ||||||| || ||||    
T  12621861 gaggaagagctaagagtttctaattttaaacttcagctttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgata 12621960  T
Q  139 atgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttt 195  Q
    | ||| | ||||||||||| || || ||| ||||| ||    |||||||||||||||    
T  12621961 aggtgcgtgaagaattgaagctgaacaaggaagagctgcatgaacaaaaagagcttt 12622017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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