View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_65 (Length: 386)
Name: NF11278_low_65
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5472586 - 5472953
Alignment:
| Q |
1 |
ccaaacccaacaccagcaaagggttcagatccaatacccggagaagcgatgacaatggaacagcacgtggtggacaagagtgcaatgatggttcaaagtt |
100 |
Q |
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| T |
5472586 |
ccaaacccaacaccagcaaagggttcagatccaactccgggcgaagcaatgacaatggaacaacacgtggtggacaagagtgcaatgatggttcaaagtt |
5472685 |
T |
|
| Q |
101 |
tcaagcccataaaccaaatgagtcagcatgtgtgtacctttgctatgtacagccatgacatgtctcgacagattgaaactcatcactactgttcaagact |
200 |
Q |
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| T |
5472686 |
tcaagcccataaaccaaatgagtcagcatgtgtgtacctttgctatgtacagtcatgacatgtctcgccagattcaaactcatcactactgttcaagact |
5472785 |
T |
|
| Q |
201 |
cactgaacagtttctccaatgtgctgtttatgattctgatgaccctaataaaggtcgtcttataggtgttgagtatatcatttctgatgatatctttgaa |
300 |
Q |
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| T |
5472786 |
cactgaacagtttctacaatgtgctgtttatgattctgatgatcctaataaaggtcgtcttataggtgttgagtatatcatttctgatgatatctttgaa |
5472885 |
T |
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| Q |
301 |
actttgcctcctgaggaacagaagctttggcattctcatgcttatgaggt-tttttcaagcttcaact |
367 |
Q |
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| T |
5472886 |
actttgcctcctgaggaacagaagctttggcattctcatgcttatgaggtatttttcaaccttcaact |
5472953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 52073506 - 52073457
Alignment:
| Q |
55 |
atggaacagcacgtggtggacaagagtgcaatgatggttcaaagtttcaa |
104 |
Q |
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| T |
52073506 |
atggaacagcacgtggtggacaagagtgcaatgatggttcaaagtttcaa |
52073457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 52074782 - 52074725
Alignment:
| Q |
3 |
aaacccaacaccagcaaagggttcagatccaatacccggagaagcgatgacaatggaa |
60 |
Q |
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| T |
52074782 |
aaacccaacaccaacaaagggttcagatccaacacctggagaagcaatgacaatggaa |
52074725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 52073457 - 52073407
Alignment:
| Q |
145 |
atgtacagccatgacatgtctcgacagattgaaactcatcactactgttca |
195 |
Q |
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| T |
52073457 |
atgtacatccatgacatgtctcgacagattgaaactcatccctgctgttca |
52073407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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