View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_68 (Length: 374)
Name: NF11278_low_68
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 35262257 - 35262629
Alignment:
| Q |
11 |
gaagaagataaggggttggactatgtttctcgttctnnnnnnnggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcg |
110 |
Q |
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| T |
35262257 |
gaagaagataaggggttggactatgtttctcgttctaaaaaaaggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcg |
35262356 |
T |
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| Q |
111 |
atgatgatgaatatgaagatgtcggtcaagaaggttcagagcatagtgatgacaa-------------ggaaagtttgttgatgaaaagcgtgagaggga |
197 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
35262357 |
atgatgatgaatatgaagatgttggtcaagaaggttcagagcatagtgatgacaagatgtctaaagatggaaagtttgttgatgaaaattgtgagaggga |
35262456 |
T |
|
| Q |
198 |
acaagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgattctgatgctgataat------------gaagaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35262457 |
acaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactttgttgattctgatgctgataatgaagaagaagaggaagaa |
35262556 |
T |
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| Q |
286 |
gaagnnnnnnnngaagatgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattggtaggtttt |
358 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35262557 |
gaagaaaaaaaagaagatgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattggtaggtttt |
35262629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 16993058 - 16992907
Alignment:
| Q |
11 |
gaagaagataaggggttggactatgtttctcgttctnnnnnnnggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcg |
110 |
Q |
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| T |
16993058 |
gaagaagataagggtttggaatatgtttctggttctaaaaaaagaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcg |
16992959 |
T |
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| Q |
111 |
atgatgatgaatatgaagatgtcggtcaagaaggttcagagcatagtgatga |
162 |
Q |
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|||||||||||||||||||||| ||| ||||||| | || ||||||||||| |
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| T |
16992958 |
atgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatga |
16992907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 16992851 - 16992734
Alignment:
| Q |
166 |
ggaaagtttgttgatgaaaagcgtgagagggaacaagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgatt |
265 |
Q |
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| T |
16992851 |
ggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactctgttgatt |
16992758 |
T |
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| Q |
266 |
ctgatgctgataatgaagaagaag |
289 |
Q |
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||||| ||||||| |||||||||| |
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| T |
16992757 |
ctgatcctgataacgaagaagaag |
16992734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 17008576 - 17008437
Alignment:
| Q |
200 |
aagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgattctgatgctgataatgaagaagaagnnnnnnnnga |
299 |
Q |
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||||||||||| |||| ||| |||| |||||||| |||| |||||||||||||||| ||||| || || || ||||||||||||||||| || |
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| T |
17008576 |
aagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaagaacactctgttggttttggtggtgataatgaagaagaagaagaaaaaga |
17008477 |
T |
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| Q |
300 |
agatgatgctgttaaagagggagtaaaaagtgatgaaagt |
339 |
Q |
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| T |
17008476 |
aggtgatgatgttaaagagggagtaaaaaaggatgaaagt |
17008437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 16992701 - 16992668
Alignment:
| Q |
325 |
aaaagtgatgaaagtgggggaattggtaggtttt |
358 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16992701 |
aaaagtgatgaaagtgggggaattggtaggtttt |
16992668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 16969134 - 16969100
Alignment:
| Q |
222 |
ttcagatgagtacggtgaaagtgatgaagaacact |
256 |
Q |
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| T |
16969134 |
ttcagatgagtatggtgaaagtgatgaagaacact |
16969100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 16978339 - 16978250
Alignment:
| Q |
200 |
aagataacccggtttcgataagttcagatgagtacggtgaaagtgatgaagaacactttgttgattctgatgctgataatgaagaagaag |
289 |
Q |
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||||||| ||| |||| ||| |||| |||||||| | ||| |||||||||||||| | ||||| || || | ||||||||||||||||| |
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| T |
16978339 |
aagataatccgatttcaataggttctgatgagtatgatgagagtgatgaagaacattctgttgcttttggcggtgataatgaagaagaag |
16978250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 17008274 - 17008226
Alignment:
| Q |
301 |
gatgatgctgttaaagagggagtaaaaagtgatgaaagtgggggaattg |
349 |
Q |
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||||||| |||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
17008274 |
gatgatgatgttaacgaaggagtaaaaagcgatgaaagtggaggaattg |
17008226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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