View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_71 (Length: 371)
Name: NF11278_low_71
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 354
Target Start/End: Complemental strand, 28276628 - 28276307
Alignment:
| Q |
28 |
ccttgatcatatacatatgtctaaaataccaattggtaatatacaaaaggaatgattgtgtgtgtccactggtctaatcaagttgatagtcacaggtacg |
127 |
Q |
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| T |
28276628 |
ccttgatcatatacatatgtctaaaataccaattg-taatatacaaaaggaatgattgtgtgtgtccactggtctaatcaacttgatagtcacaggtacg |
28276530 |
T |
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| Q |
128 |
accttagtaacagatttactaaaaaatatccaaaatacatgaccccaaaaaagataagctacgtcataacgaatataaacaggtaagccaataaccctat |
227 |
Q |
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| T |
28276529 |
accttagtaacagatttactaaaaaatatccaaaatacatgaccccaaaaa-gataagctacgtcataacgaatataaacaggtaagccaataaccctat |
28276431 |
T |
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| Q |
228 |
gtagtatgtacctctaaccaagtcaatcaacagaggtggtgactttggctacataattgtcatcctgaaaaataactaccatatattatcttcagcaacc |
327 |
Q |
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| T |
28276430 |
gta---tgtacctctaaccaagtcaatcaacagaggtggtgactttggctacataattgtcatcctgaaaaataactaccatatattatcttcagcaacc |
28276334 |
T |
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| Q |
328 |
tctcctatagattgatctacatgtcct |
354 |
Q |
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| T |
28276333 |
tctcctatagattgatctacatgtcct |
28276307 |
T |
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