View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11278_low_72 (Length: 371)

Name: NF11278_low_72
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11278_low_72
NF11278_low_72
[»] chr4 (12 HSPs)
chr4 (9-360)||(36370095-36370447)
chr4 (177-360)||(36389058-36389241)
chr4 (171-360)||(36418461-36418650)
chr4 (216-360)||(36375335-36375479)
chr4 (216-360)||(36428441-36428585)
chr4 (84-356)||(36398609-36398880)
chr4 (215-356)||(36406380-36406521)
chr4 (215-360)||(36434939-36435084)
chr4 (9-79)||(36429214-36429284)
chr4 (9-79)||(36399602-36399672)
chr4 (9-72)||(36407066-36407129)
chr4 (9-65)||(36435681-36435737)
[»] chr1 (2 HSPs)
chr1 (300-356)||(47583965-47584021)
chr1 (231-271)||(47640295-47640335)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 36370447 - 36370095
Alignment:
Q  9 caatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaatatattagcaaacagtttaagctatgaattgttgctgcatgcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36370447 caatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaatatattggcaaacagtttaagctatgaattgttgctgcatgcc 36370348  T
Q  109 ggacgggcatgcagactccatagaaaacgcccgacatgaagcataggctaaatnnnnnnn-tcattcaggctagagatacaatgactgagctagaaagat 207  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  36370347 ggacgggcatggagactccatagaaaacgcccgacatgaagcataggctaaataaaaaaaatcattcaggctagagatacaatgactgagctagaaagat 36370248  T
Q  208 gcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370247 gcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactag 36370148  T
Q  308 atttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttctt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370147 atttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttctt 36370095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 177 - 360
Target Start/End: Complemental strand, 36389241 - 36389058
Alignment:
Q  177 gctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctt 276  Q
    |||||||| ||||| | |||| | || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36389241 gctagagagacaataagtgagtttgagagatgcttactgaatataaaaaggtctaggcttttgtttggtaagtattcataaactagcatcctttcttctt 36389142  T
Q  277 tttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttctt 360  Q
    ||||||| |||||||  |||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  36389141 tttcaaagcaacaactgagcaaccttactagatttctgtgttggagtttaactaaaagtttaacttcagttttaaactcttctt 36389058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 171 - 360
Target Start/End: Complemental strand, 36418650 - 36418461
Alignment:
Q  171 attcaggctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatccttt 270  Q
    ||||||| |||||| ||||||| |||   ||| ||| || ||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  36418650 attcaggttagagagacaatgattgattcagagagaggcataccgaatataaagaagtctaggcttttgtttgataggtattcgtaaactagcatccttt 36418551  T
Q  271 cttctttttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttctt 360  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||    
T  36418550 cttctttttcaaagcaacaaccgagcaacctcactagatttctgtgttggagtttaactaaaagtttaatttcattcttaaactcttctt 36418461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 216 - 360
Target Start/End: Complemental strand, 36375479 - 36375335
Alignment:
Q  216 aatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctgt 315  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  36375479 aatataaagaaatctaggcttttgtttggtaagtattcataaaccagcatcctttcttccttttcaaagcaacaacctagcaacctcactagatttctgt 36375380  T
Q  316 gttgaagtttgactaaaagtttaacttcatttttaaactcttctt 360  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||    
T  36375379 gttggagtttaactaaaagtttaacttcagttttaaactcttctt 36375335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 216 - 360
Target Start/End: Complemental strand, 36428585 - 36428441
Alignment:
Q  216 aatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctgt 315  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36428585 aatataaagaagtctaggcttttgtttggtagatattcataaactagcatcctttcttctttttcaaagcaacaaccgagcaacctcactagatttctgt 36428486  T
Q  316 gttgaagtttgactaaaagtttaacttcatttttaaactcttctt 360  Q
    |||| ||||| ||||||||||||| |||||| |||||||||||||    
T  36428485 gttggagtttaactaaaagtttaatttcattcttaaactcttctt 36428441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 84 - 356
Target Start/End: Complemental strand, 36398880 - 36398609
Alignment:
Q  84 aagctatgaattgttgctgcatgccggacgggcatgcagactccatagaaaac--gcccgacatgaagcataggctaaatnnnnnnntcattcaggctag 181  Q
    |||||| || |||||||||||||||||||| ||||| ||||||||||||| ||  ||| ||||||||| ||| ||||||        | ||||| |||||    
T  36398880 aagctacgatttgttgctgcatgccggacgagcatggagactccatagaacacacgccggacatgaagtatacgctaaacacaggttt-attcaagctag 36398782  T
Q  182 agatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttca 281  Q
    ||| ||||||| ||||  ||| |||  | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||     
T  36398781 agagacaatgagtgagtcagagaga--cataccgaatataaagaagtctaggcttttgtttggtaggtattcataaactagcattctttcttctttttcg 36398684  T
Q  282 aaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactct 356  Q
    || ||||||||||||||||| |||||||||||||| || || || ||||||||| ||| ||||||||||||||||    
T  36398683 aagcaacaaccaagcaaccttactagatttctgtgctggagcttaactaaaagtgtaatttcatttttaaactct 36398609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 36406521 - 36406380
Alignment:
Q  215 gaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctg 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  36406521 gaatataaagaagtctaggcttttgtttggtaggtattcataaactaacatcctttcttctttttcaaagcaacaaccgagcaacctcactagatttctg 36406422  T
Q  315 tgttgaagtttgactaaaagtttaacttcatttttaaactct 356  Q
    ||||| ||||| ||||||||| ||| ||||||||||||||||    
T  36406421 tgttggagtttaactaaaagtgtaatttcatttttaaactct 36406380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 215 - 360
Target Start/End: Complemental strand, 36435084 - 36434939
Alignment:
Q  215 gaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctg 314  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  36435084 gaatataaagaagtccaggcttttgtttggtaggtattcataaactaacatcctttcttctttttcaaagcaacaaccgagcaacctcactagatttctg 36434985  T
Q  315 tgttgaagtttgactaaaagtttaacttcatttttaaactcttctt 360  Q
    ||||| ||||| ||||||||  |||||||| |||||||||||||||    
T  36434984 tgttggagtttaactaaaagcgtaacttcagttttaaactcttctt 36434939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36429284 - 36429214
Alignment:
Q  9 caatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaatatattagcaaaca 79  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36429284 caatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaaaca 36429214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36399672 - 36399602
Alignment:
Q  9 caatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaatatattagcaaaca 79  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  36399672 caatgatgacctttggttttgatctgagttgaatagtttaagttgacaaaaattgaacatattagcaaaca 36399602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 36407129 - 36407066
Alignment:
Q  9 caatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaatatatta 72  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||    
T  36407129 caatgatgacctttggttttgatctgagttgaacagtttaagtttacaaatatagaacatatta 36407066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 36435737 - 36435681
Alignment:
Q  9 caatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaa 65  Q
    |||| |||||||||| ||||||||||||||||||| |||| |||| |||||||||||    
T  36435737 caataatgacctttggttttgatctgagttgaacaatttatgtttccaaaaattgaa 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 47584021 - 47583965
Alignment:
Q  300 ctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactct 356  Q
    ||||||||||||||||||||||| ||| ||| || || ||| |||||||||||||||    
T  47584021 ctcactagatttctgtgttgaagcttggctataacttgaacctcatttttaaactct 47583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 47640335 - 47640295
Alignment:
Q  231 aggcttttgtttggtaagtattcataaactagcatcctttc 271  Q
    |||||||||||||||| |||||||||||| |||||| ||||    
T  47640335 aggcttttgtttggtatgtattcataaacaagcatcttttc 47640295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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