View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_73 (Length: 366)
Name: NF11278_low_73
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 58 - 353
Target Start/End: Original strand, 45878912 - 45879210
Alignment:
| Q |
58 |
aaaattggtcattagaccccctttaatggttcacagtcccctcaaattgctcataatatgaagtaatatatgaataaaaagcatgtgaataaa---atta |
154 |
Q |
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| T |
45878912 |
aaaattggtcattagaccccctttaatggttcacagtcccctcaaattgctcataatatgaagtaatatatgaataaaaagcacgtgaatgaattaatta |
45879011 |
T |
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| Q |
155 |
tatagaactacggccatgaaaacaataatatagagtgtaattatcacaaagtgcaagtgtgacacaaaactaatgaacctgattgagaaagcaattgtaa |
254 |
Q |
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| T |
45879012 |
tatagaactacggccatgaaaacaataatatagagtgtaattatcacaaagtgcaagtgtggcacaaaactaatgaacctgattgagaaagcaattgtaa |
45879111 |
T |
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| Q |
255 |
cccaattatctcatcttcattttttgtacataatgattgtattacattagattttggcaaatcnnnnnnnnnaaaagagaatttctttttccaccattc |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
45879112 |
cccaattatctcatcttcattttttgtacataatgattgtattacattagattttagcaaatctttttttttaaaagagaatttctttttccaccattc |
45879210 |
T |
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