View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_76 (Length: 357)
Name: NF11278_low_76
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 18611730 - 18611393
Alignment:
| Q |
1 |
tagggggcaattcacctccacacacaaaaatcttcttaagaaggaaagaaagtgattgattagaaacttcattcttattacttttatccaaactctttct |
100 |
Q |
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| T |
18611730 |
taggtggcaattcacctccacacacaaaaatcttcttaagaaggaaagaaagtgattgattagaaacttcattcttattacttttatccaaactctttct |
18611631 |
T |
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| Q |
101 |
tcccctattgcatattaaattgttgcttggatagaaattaccactctcttccaaattcattttcaattcattctgaaaatttccaacttcttcaaaagag |
200 |
Q |
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| T |
18611630 |
tcccctattgcatattaaattgttgcttggatagaaattaccactctcttccaaattcattttcaattcattctgaaaattcccaacttcttcaaaagag |
18611531 |
T |
|
| Q |
201 |
aactcatgtgtgaaatcttgaaaggagtatgaatcctcttcatcaatacttttatttgaattttcattcaaattgttattcccaagcgttccaattgcaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18611530 |
aactcatgtgtgaaatcttgaaaggagtgtgaatcctcttcatcaatacttttatttgaattttcattcaaattgttattcccaagtgttccaattgcaa |
18611431 |
T |
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| Q |
301 |
gtattgcatgatcccaatcactgaattcttgtttataa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
18611430 |
gtattgcatgatcccaatcactgaattcttgtttataa |
18611393 |
T |
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