View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_low_77 (Length: 356)
Name: NF11278_low_77
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_77 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 37728182 - 37727855
Alignment:
| Q |
19 |
acactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcacaagatccttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37728182 |
acactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcacaagatccttcc |
37728083 |
T |
|
| Q |
119 |
atccgattccgaggagatcatgaaagccaaaatggtattgtaaatgacacaatccctataatcgttcaatgtctgatgcattatctatcttcccaaaggc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37728082 |
atccgattccgaggagatcatgaaagccaaaatggtattgtaaatgacacaatcccaataatcgttcaatgtctgatgcattatctatcttcccaaaggc |
37727983 |
T |
|
| Q |
219 |
catccaaaagattaagcattatgtatatccatatatatgacaagtgttgtatgaagtaggaagttaagcattgcataatcgattttctttcttttgggtt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37727982 |
catccaaaagattaagcattatgtatatccatatatatgacaagtgttgtatgaagtaggaagttaagcattgcataatcgattttctttcttttgggtt |
37727883 |
T |
|
| Q |
319 |
gggggttcatgtgcatcatatgcctttg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37727882 |
gggggttcatgtgcatcatatgcctttg |
37727855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 17910693 - 17910774
Alignment:
| Q |
27 |
tatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcaca |
108 |
Q |
| |
|
||||||| ||| ||||||||| || | |||||||||||||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
17910693 |
tatgcctttgatgtaacaaaagctggccagatatttgatcatctgctcaaagataagaagattaagttgttagatggtcaca |
17910774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 23286717 - 23286804
Alignment:
| Q |
20 |
cactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcac |
107 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| | | |||||||||||| | ||||||||||| | ||| ||||||||||| |||| |
|
|
| T |
23286717 |
cactgagtatgcctttgacacaacgaaagttggccaaatatttgatcatatgctcaaagataagcatatttggctattagatgctcac |
23286804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University