View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_78 (Length: 355)
Name: NF11278_low_78
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 31337427 - 31337118
Alignment:
| Q |
14 |
agataaacatgaagaaaaaataaaacctaaaacattactattactctaatgatagatagtatgacagagagaactgaccttatctccacgagaaatcccc |
113 |
Q |
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| T |
31337427 |
agataaacatgaagaaaaaa-aaatcctaaaacattactataactctaatgatagatagtatgacagagagaactgaccttatctccacgagaaatcccc |
31337329 |
T |
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| Q |
114 |
aactgggagagagcagaagcgagtttgagacaacgttgatgagtttgaccccaattatacttcaaagaaccataaacaagtgatgttctgtctctacata |
213 |
Q |
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| T |
31337328 |
aactgggagagagcagaagcgagtttgagacaacgttgatgagtttgaccccaattatacttcaaagaaccataaacaagtgatgttctgtctctacaaa |
31337229 |
T |
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| Q |
214 |
cctttgctgctctctccaagaagttgataggtgacaaaggaacagaatttgcattgcaatgaactagcccttccattgattcccatgatcctggaacaac |
313 |
Q |
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| T |
31337228 |
cctttgctgctctctccaagaagttgataggtgacaaaggaacagaatttgcattgcaatgaactagcccttccattgattcccatgatcctggaacaac |
31337129 |
T |
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| Q |
314 |
gtcctgtaaaa |
324 |
Q |
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| T |
31337128 |
gtcctgaaaaa |
31337118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 95 - 305
Target Start/End: Complemental strand, 31315299 - 31315089
Alignment:
| Q |
95 |
atctccacgagaaatccccaactgggagagagcagaagcgagtttgagacaacgttgatgagtttgaccccaattatacttcaaagaaccataaacaagt |
194 |
Q |
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| T |
31315299 |
atctccacgggaaatccctaactgggtaagagaagaagcaagtttgagacaacgttgatgagtttgaccccaattatacttcaaagaaccataaacaagt |
31315200 |
T |
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| Q |
195 |
gatgttctgtctctacatacctttgctgctctctccaagaagttgataggtgacaaaggaacagaatttgcattgcaatgaactagcccttccattgatt |
294 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
31315199 |
gatgttctgtctctacaaacctttgctgctctctccaagaagttgataggtgacaaaggaacagaatttgcatggcaatgaactagcccttgcattgatt |
31315100 |
T |
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| Q |
295 |
cccatgatcct |
305 |
Q |
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| T |
31315099 |
cccatgatcct |
31315089 |
T |
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