View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11278_low_81 (Length: 344)
Name: NF11278_low_81
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_81 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 12454391 - 12454051
Alignment:
| Q |
1 |
tcatcacatcaagaatcaaacataacatacaaattgtannnnnnnncttcctgatataaacttacattacattattacaaatatatatgaaaaattctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12454391 |
tcatcacatcaagaatcaaacataacatacaaattgtattttt---cttcctgatataaacttacattacattattacaaatatatatgaaaaattctta |
12454295 |
T |
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| Q |
101 |
ctcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12454294 |
ctcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaaatc |
12454195 |
T |
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| Q |
201 |
tcacctgcagcattacatgttgaagaacctgcacctcctcttcttcctccatttgatggatatttcaatgaactcgtcacttttgcaaaagcttgttcag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12454194 |
tcacctgcagcattacatgttgaagaacctgcacctcctcttcttcctccatttgatggatatttcaatgaactcatcacttttgcaaaagcttgttcag |
12454095 |
T |
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| Q |
301 |
tgcacataggaactcctagtgatgtcacagtgctgttctgtgct |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12454094 |
tgcacataggaactcctagtgatgtcacagtgctgttctgtgct |
12454051 |
T |
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