View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11278_low_86 (Length: 332)
Name: NF11278_low_86
Description: NF11278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11278_low_86 |
 | |
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| [»] scaffold0925 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0081 (1 HSPs) |
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| [»] scaffold0116 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0253 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 18617824 - 18617520
Alignment:
| Q |
18 |
cctactggttcatgtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatagatc |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18617824 |
cctactggttcatgtggaacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatagatc |
18617725 |
T |
|
| Q |
118 |
taaacggctgaccaccaagtcccacagtaatacaaacaagtttggtgaagtacaacgtttgggttgccagattaatttcccaaacgtcagtcagtggttc |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
18617724 |
taaacggctgaccaccaagtcccatagtaatacaaacaagtttggtgaagtacaacgtttgggatgccatattaatttcccaaacgtcattcagtggttc |
18617625 |
T |
|
| Q |
218 |
ctcaattaactctcacagataaagttatttactcacataaacaatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18617624 |
ctcaattaactctcacagataaagttatttactcacataaacaatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttac |
18617525 |
T |
|
| Q |
318 |
ctttg |
322 |
Q |
| |
|
||||| |
|
|
| T |
18617524 |
ctttg |
18617520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 19239872 - 19240055
Alignment:
| Q |
18 |
cctactggttcatgtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatagatc |
117 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||| || ||||||||||| || || || |||| |||||||| ||||||| |
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|
| T |
19239872 |
cctactagtccaggtgggacaacacccatgtcatgaagagctaagtacaacctctacaatggtaaaattatttcaatagtctcatgagtaataatagata |
19239971 |
T |
|
| Q |
118 |
taaacggctgaccaccaagtcccacagtaatacaaacaagtttggtgaagtacaacgtttgggttgccagattaatttcccaaa |
201 |
Q |
| |
|
|| |||||| |||||||||| || |||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
19239972 |
tagtcggctgtccaccaagtctcatagtaatccaaacaagttaggtgaagtacaatgtttgggttgccagatttatttcccaaa |
19240055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 19241465 - 19241568
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||| | ||||| |||| |||||||||||||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
19241465 |
aattaactctcacaaatagagttatttaatcacatataatcaattaagcacataacttatgcaaaatctttaacatttattagtagtaattccccttacc |
19241564 |
T |
|
| Q |
319 |
tttg |
322 |
Q |
| |
|
|||| |
|
|
| T |
19241565 |
tttg |
19241568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 21185370 - 21185471
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||| | || || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
21185370 |
aattaactctcacaagtagagttatttagtcacatataatcacttaagcacataacttatgcaaaatctttaaaacttattagtagtaattccccttacc |
21185469 |
T |
|
| Q |
319 |
tt |
320 |
Q |
| |
|
|| |
|
|
| T |
21185470 |
tt |
21185471 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 21629427 - 21629528
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||| | || || |||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
21629427 |
aattaactctcacaagtagagttattgactcacatataatcacttaagcacataacttatgcaaaatctttaaaatttattagtagtaattccccttacc |
21629526 |
T |
|
| Q |
319 |
tt |
320 |
Q |
| |
|
|| |
|
|
| T |
21629527 |
tt |
21629528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 21620725 - 21620808
Alignment:
| Q |
31 |
gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatag |
114 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||| ||| ||||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
21620725 |
gtgggacaacacccatgtcatggagagctaggtacaacctctgaaatggtagaatcatctctgtggtttcatgagtaacaatag |
21620808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 21628184 - 21628267
Alignment:
| Q |
31 |
gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatag |
114 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||| ||| ||||||| |||||||||| |||| | | |||||||||||| |
|
|
| T |
21628184 |
gtgggacaacacccatgtcatggggagctaggtacaacctctgaaatggtagaatcatctctgtggtttcacgagtaacaatag |
21628267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 9688092 - 9688135
Alignment:
| Q |
278 |
tgcaaaatctttaaaacttattagtagtaattccctttacctttg |
322 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
9688092 |
tgcaaaatctttaaaacttattagtggtaatt-cctttacctttg |
9688135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 10232410 - 10232309
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| | || || |||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
10232410 |
aattaactctcacaagtagagttatttactcacatataatcacttaagcacataacttatgcaaaatctttaaaatttattagtagtaattccccttacc |
10232311 |
T |
|
| Q |
319 |
tt |
320 |
Q |
| |
|
|| |
|
|
| T |
10232310 |
tt |
10232309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0925 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0925
Description:
Target: scaffold0925; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 217 - 124
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccc |
312 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||| | || || |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
217 |
aattaactcttacaagtagagttatttactcacatataatcacttaagcacataacttatgcaaaatctttaaaacttattagtagtaattccc |
124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 22389284 - 22389377
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccc |
312 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||| | || || |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22389284 |
aattaactcttacaagtagagttatttactcacatataatcacttaagcacataacttatgcaaaatctttaaaacttattagtagtaattccc |
22389377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 141859 - 141776
Alignment:
| Q |
31 |
gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaacaatag |
114 |
Q |
| |
|
||||||||||||| |||||||| ||| ||| |||||||| ||| |||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
141859 |
gtgggacaacacctatgtcatggagagctaggtacaacctctgaaatggtaaaatcatctctgtggtttcatgagtaacaatag |
141776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 1623 - 1724
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| | || || |||| ||||||||||||||||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
1623 |
aattaactctcacaagtagagttatttactcagatataatcacttaagcacataacttatgcaaaatctttaaaacatattagtagtaattctccttacc |
1722 |
T |
|
| Q |
319 |
tt |
320 |
Q |
| |
|
|| |
|
|
| T |
1723 |
tt |
1724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 32452 - 32397
Alignment:
| Q |
265 |
agcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacctt |
320 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32452 |
agcacataacttatacaaaatctttaaaacttattagtagtaattccccttacctt |
32397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 41801 - 41757
Alignment:
| Q |
265 |
agcatataacttatgcaaaatctttaaaacttattagtagtaatt |
309 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41801 |
agcacataacttatgcaaaatctttaaaatttattagtagtaatt |
41757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 392948 - 393027
Alignment:
| Q |
31 |
gtgggacaacacccatgtcatgaagatctaagtacaacccctgtaatggtaaaatcatctctatggtcttatgagtaaca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||| || ||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
392948 |
gtgggacaacacccatgtcatggagagctaggtacaacctctacaatggtagaatcatctctgtggtctcatgagtaaca |
393027 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 396720 - 396761
Alignment:
| Q |
270 |
ataacttatgcaaaatctttaaaacttattagtagtaattccc |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
396720 |
ataacttatgcaaa-tctttaaaacttattagtagtaattccc |
396761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0253 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0253
Description:
Target: scaffold0253; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 7841 - 7942
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| | || || |||| |||||||||| |||||||||||||| ||||| ||||||||| | ||||| |
|
|
| T |
7841 |
aattaactctcacaagtagagttatttactcacatataatcacttaagcacataacttatgaaaaatctttaaaacatattattagtaattctccttacc |
7940 |
T |
|
| Q |
319 |
tt |
320 |
Q |
| |
|
|| |
|
|
| T |
7941 |
tt |
7942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0253; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 17266 - 17367
Alignment:
| Q |
221 |
aattaactctcacagataaagttatttactcacataaa--caatttagcatataacttatgcaaaatctttaaaacttattagtagtaattccctttacc |
318 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| | || || |||| |||||||||| |||||||||||||| ||||| ||||||||| | ||||| |
|
|
| T |
17266 |
aattaactctcacaagtagagttatttactcacatataatcacttaagcacataacttatgaaaaatctttaaaacatattattagtaattctccttacc |
17365 |
T |
|
| Q |
319 |
tt |
320 |
Q |
| |
|
|| |
|
|
| T |
17366 |
tt |
17367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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